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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatcaatcaattaacctcaatttcaatttctttaaattttttcttcattttctgcgttttctgacctaataattctcttgtttcgattcagGTGATTCTTCTGGGTCTTCGTGTCCGTTCTGCATACTGGAGAAGCAGATTGCACGGTCGCTGCGATTGGATCTCACGCACGACGCGCCGTCCAAGATCCA

Basic information

species Glycine max
transcript GLYMA08G18720.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10846953|gb|BF069678.1|BF069678
EST:     CACTCCTCCTCTCGCCAATTTCTGCCTCCGTCTCCAACACTCTTCTCTCT                         GTGATTCTTCTGGGTCTTCGTGTCCGTTCTGCATACTGGAGAAGCAGATTG
genomic: CACTCCTCCTCTCGCCAATTTCTGCCTCCGTCTCCAACACTCTTCTCTCTgtaatcaatc ... ttcgattcagGTGATTCTTCTGGGTCTTCGTGTCCGTTCTGCATACTGGAGAAGCAGATTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttttcttcattttctgcgttttctgacctaataattctcttgtttcgattcagGTGATTCTTCTGGGTCTTCGTGTCCGTTCTGCATACTGGAGAAGCAGATTGCACGGTCGCTGCGATTGGATCTCACGCACGACGCGCCGTCCAAGATCCA
                                    ttctcttgtttc  CT-rich tract
                              taataattct  TA-rich tract