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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taggcaaaatcgatatacaaagaataaataacctagtgataaaaaaaaagtttttatctctgttttcaatacaaataaaaatgtgtgattttcaacacagGTGTATGACACTTGGAGGAAAATGTGGCTTTCTAAAGGAGAGGAGCATGAGGCAGGGAAGAAGGAGTTTATCTCTATCTTTAAGCAGCTAGAAGAGACAC

Basic information

species Glycine max
transcript GLYMA08G18640.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151409595|gb|EV279403.1|EV279403
EST:     TTATGAGAGAGCTCAAGCCAGATTCTGGGTAGATTACATTTGACAAAAAG                         GTGTATGACACTTTGGAGGAAAATGTGGCTTTTCTAAAGGAGAGGAGCATG
genomic: TTATGAGAGAGCTCAAGCCAGATTCTGGGTAGATTACATT-GACAAAAAGgtacatgctt ... ttcaacacagGTGTATGACACTT-GGAGGAAAATGTGGCTTT-CTAAAGGAGAGGAGCATG
EST: gi|209725108|gb|BW659803.1|BW659803
EST:     CTTATGAGAGAGCTCAAGCCAGATTCTGGGTAGATTACATTGACAAAAAG                         GTGTATGACACTTGGAGGAAAATGTGGCTTTCTAAAGGAGAGGAGCATGAG
genomic: CTTATGAGAGAGCTCAAGCCAGATTCTGGGTAGATTACATTGACAAAAAGgtacatgctt ... ttcaacacagGTGTATGACACTTGGAGGAAAATGTGGCTTTCTAAAGGAGAGGAGCATGAG
EST: gi|23052759|gb|BU577250.1|BU577250
EST:     CTTATGAGAGAGCTCAAGCCAGATTCTGGGTAGATTACATTGACAAAAAG                         GTGTATGACACTTGGAGGAAAATGTGGCTTTCTAAAGGAGAGGAGCATGAG
genomic: CTTATGAGAGAGCTCAAGCCAGATTCTGGGTAGATTACATTGACAAAAAGgtacatgctt ... ttcaacacagGTGTATGACACTTGGAGGAAAATGTGGCTTTCTAAAGGAGAGGAGCATGAG
EST: gi|16996491|gb|BM085863.1|BM085863
EST:     CTTATGAGAGAGCTCAAGCCAGATTCTGGGTAGATTACATTGACAAAAAG                         GTGTATGACACTTGGAGGAAAATGTGGCTTTCTAAAGGAGAGGAGCATGAG
genomic: CTTATGAGAGAGCTCAAGCCAGATTCTGGGTAGATTACATTGACAAAAAGgtacatgctt ... ttcaacacagGTGTATGACACTTGGAGGAAAATGTGGCTTTCTAAAGGAGAGGAGCATGAG
EST: gi|7326907|gb|AW620705.1|AW620705
EST:     CTTATGAGAGAGCTCAAGCCAGATTCTGGGTAGATTACATTGACAAAAAG                         GTGTATGACACTTGGAGGAAAATGTGGCTTTCTAAAGGAGAGGAGCATGAG
genomic: CTTATGAGAGAGCTCAAGCCAGATTCTGGGTAGATTACATTGACAAAAAGgtacatgctt ... ttcaacacagGTGTATGACACTTGGAGGAAAATGTGGCTTTCTAAAGGAGAGGAGCATGAG
EST: gi|12691134|gb|BG157470.1|BG157470
EST:     CTTATGAGAGAGCTCAAGCCAGATTCTGGGTAGATTACATTGACAAAAAG                         GTGTATGACACTTGGAGGAAAATGTGGCTTTCTAAAGGATAGGAGCATGAG
genomic: CTTATGAGAGAGCTCAAGCCAGATTCTGGGTAGATTACATTGACAAAAAGgtacatgctt ... ttcaacacagGTGTATGACACTTGGAGGAAAATGTGGCTTTCTAAAGGAGAGGAGCATGAG
EST: gi|120531962|gb|EH260095.1|EH260095
EST:     CTTATGAGAGAGCTCAAGCCAGATTCTGGGTAGATTACATTGACAAAAAG                         GTGTATGACACTTGGAGGAAAATGTGGCTTTCTAAAGGAGAGGAGCATGAG
genomic: CTTATGAGAGAGCTCAAGCCAGATTCTGGGTAGATTACATTGACAAAAAGgtacatgctt ... ttcaacacagGTGTATGACACTTGGAGGAAAATGTGGCTTTCTAAAGGAGAGGAGCATGAG
EST: gi|213608356|gb|DB972656.1|DB972656
EST:     CTTATGAGAGAGCTCAAGCCAGATTCTGGGTAGATTACATTGACAAAAAG                         GTGTATGACACTTGGAGGAAAATGTGGCTTTCTAAAGGAGAGGAGCATGAG
genomic: CTTATGAGAGAGCTCAAGCCAGATTCTGGGTAGATTACATTGACAAAAAGgtacatgctt ... ttcaacacagGTGTATGACACTTGGAGGAAAATGTGGCTTTCTAAAGGAGAGGAGCATGAG
EST: gi|7691398|gb|AW759526.1|AW759526
EST:     CTTATGAGAGAGCTCAAGCCAGATTCTGGGTAGATTACATTGACAAAAAG                         GTGTATGACACTTGGAGGAAAATGTGGCTTTCTAAAGGAGAGGAGCATGAG
genomic: CTTATGAGAGAGCTCAAGCCAGATTCTGGGTAGATTACATTGACAAAAAGgtacatgctt ... ttcaacacagGTGTATGACACTTGGAGGAAAATGTGGCTTTCTAAAGGAGAGGAGCATGAG
EST: gi|151410671|gb|EV280486.1|EV280486
EST:     CTTATGAGAGAGCTCAAGCCAGATTCTGGGTAGATTACATTGACAAAAAG                         GTGTATGACACTTGGAGGAAAATGTGGCTTTTCTAAAGGAGAGGAGCATGA
genomic: CTTATGAGAGAGCTCAAGCCAGATTCTGGGTAGATTACATTGACAAAAAGgtacatgctt ... ttcaacacagGTGTATGACACTTGGAGGAAAATGTGGCTTT-CTAAAGGAGAGGAGCATGA
EST: gi|192298311|gb|FG992101.1|FG992101
EST:     CTTATGAGAGAGCTCAAGCCAGATTCTGGGTAGATTACATTGACAAAAAG                         GTGTATGACACTTGGAGGAAAATGTGGCTTTCTAAAGGAGAGGAGCATGAG
genomic: CTTATGAGAGAGCTCAAGCCAGATTCTGGGTAGATTACATTGACAAAAAGgtacatgctt ... ttcaacacagGTGTATGACACTTGGAGGAAAATGTGGCTTTCTAAAGGAGAGGAGCATGAG
EST: gi|120531930|gb|EH260063.1|EH260063
EST:     CTTATGAGAGAGCTCAAGCCAGATTCTGGGTAGATTACATTGACAAAAAG                         GTGTATGACACTTGGAGGAAAATGTGGCTTTCTAAAGGAGAGGAGCATGAG
genomic: CTTATGAGAGAGCTCAAGCCAGATTCTGGGTAGATTACATTGACAAAAAGgtacatgctt ... ttcaacacagGTGTATGACACTTGGAGGAAAATGTGGCTTTCTAAAGGAGAGGAGCATGAG
EST: gi|192332173|gb|FK026397.1|FK026397
EST:     CTTATGAGAGAGCTCAAGCCAGATTCTGGGTAGATTACATTGACAAAAAG                         GTGTATGACACTTGGAGGAAAATGTGGCTTTCTAAAGGAGAGGAGCATGAG
genomic: CTTATGAGAGAGCTCAAGCCAGATTCTGGGTAGATTACATTGACAAAAAGgtacatgctt ... ttcaacacagGTGTATGACACTTGGAGGAAAATGTGGCTTTCTAAAGGAGAGGAGCATGAG
EST: gi|192298312|gb|FG992102.1|FG992102
EST:     CTTATGAGAGAGCTCAAGCCAGATTCTGGGTAGATTACATTGACAAAAAG                         GTGTATGACACTTGGAGGAAAATGTGGCTTTCTAAAGGAGAGGAGCATGAG
genomic: CTTATGAGAGAGCTCAAGCCAGATTCTGGGTAGATTACATTGACAAAAAGgtacatgctt ... ttcaacacagGTGTATGACACTTGGAGGAAAATGTGGCTTTCTAAAGGAGAGGAGCATGAG
EST: gi|192332174|gb|FK026398.1|FK026398
EST:     AGAGAGCTCAAGCCAGATTCTGGGTAGATTACATTGACAAAAAG                         GTGTATGACACTTGGAGGAAAATGTGGCTTTCTAAAGGAGAGGAGCATGAG
genomic: AGAGAGCTCAAGCCAGATTCTGGGTAGATTACATTGACAAAAAGgtacatgctt ... ttcaacacagGTGTATGACACTTGGAGGAAAATGTGGCTTTCTAAAGGAGAGGAGCATGAG
EST: gi|213607641|gb|DB958660.1|DB958660
EST:     CTTATGAGAGAGCTCAAGCCAGATTCTGGGTAGATTACATTGACAAAAAG                         GTGTATGACACTTGGAGGAAAATGTGGCTTTCTAAAGGAGAGGAGCATGAG
genomic: CTTATGAGAGAGCTCAAGCCAGATTCTGGGTAGATTACATTGACAAAAAGgtacatgctt ... ttcaacacagGTGTATGACACTTGGAGGAAAATGTGGCTTTCTAAAGGAGAGGAGCATGAG
EST: gi|6481500|gb|AW200771.1|AW200771
EST:     AGAGAGCTCAAGCCAGATTCTGGGTAGATTACATTGACAAAAAG                         GTGTATGACACTTGGAGGAAAATGTGGCTTTCTAAAGGAGAGGAGCATGAG
genomic: AGAGAGCTCAAGCCAGATTCTGGGTAGATTACATTGACAAAAAGgtacatgctt ... ttcaacacagGTGTATGACACTTGGAGGAAAATGTGGCTTTCTAAAGGAGAGGAGCATGAG
EST: gi|12773688|gb|BG238615.1|BG238615
EST:     CTAATGAGAGAGCTCAAGCCAGATTCTGGGTAGATTACATTGACAAAAAG                         GTGTATGACACTTGGAGGAAAATGTGGCTTTCTAAAGGAGAGGAGCATGAG
genomic: CTTATGAGAGAGCTCAAGCCAGATTCTGGGTAGATTACATTGACAAAAAGgtacatgctt ... ttcaacacagGTGTATGACACTTGGAGGAAAATGTGGCTTTCTAAAGGAGAGGAGCATGAG
EST: gi|192319750|gb|FK013778.1|FK013778
EST:     CTTATGAGAGAGCTCAAGCCAGATTCTGGGTAGATTACATTGACAAAAAG                         GTGTATGACACTTGGAGGAAAATGTGGCTTTCTAAAGGAGAGGAGCATGAG
genomic: CTTATGAGAGAGCTCAAGCCAGATTCTGGGTAGATTACATTGACAAAAAGgtacatgctt ... ttcaacacagGTGTATGACACTTGGAGGAAAATGTGGCTTTCTAAAGGAGAGGAGCATGAG
EST: gi|151407126|gb|EV276941.1|EV276941
EST:     CTTATGAGAGAGCTCAAGCCAGATTCTGGGTAGATTACATTGACAAAAAG                         GTGTATGACACTTGGAGGAAAATGTGGCTTTCTAAAGGAGAGGAGCATGAG
genomic: CTTATGAGAGAGCTCAAGCCAGATTCTGGGTAGATTACATTGACAAAAAGgtacatgctt ... ttcaacacagGTGTATGACACTTGGAGGAAAATGTGGCTTTCTAAAGGAGAGGAGCATGAG
EST: gi|213597875|gb|DB958256.1|DB958256
EST:     CTTATGAGAGAGCTCAAGCCAGATTCTGGGTAGATTACATTGACAAAAAG                         GTGTATGACACTTGGAGGAAAATGTGGCTTTCTAAAGGAGAGGAGCATGAG
genomic: CTTATGAGAGAGCTCAAGCCAGATTCTGGGTAGATTACATTGACAAAAAGgtacatgctt ... ttcaacacagGTGTATGACACTTGGAGGAAAATGTGGCTTTCTAAAGGAGAGGAGCATGAG
EST: gi|192332135|gb|FK024595.1|FK024595
EST:     CCAGATTCTGGGTAGATTACATTGACAAAAAG                         GTGTATGACACTTGGAGGAAAATGTGGCTTTCTAAAGGAGAGGAGCATGAG
genomic: CCAGATTCTGGGTAGATTACATTGACAAAAAGgtacatgctt ... ttcaacacagGTGTATGACACTTGGAGGAAAATGTGGCTTTCTAAAGGAGAGGAGCATGAG
EST: gi|192332134|gb|FK024594.1|FK024594
EST:     CTTATGAGAGAGCTCAAGCCAGATTCTGGGTAGATTACATTGACAAAAAG                         GTGTATGACACTTGGAGGAAAATGTGGCTTTCTAAAGGAGAGGAGCATGAG
genomic: CTTATGAGAGAGCTCAAGCCAGATTCTGGGTAGATTACATTGACAAAAAGgtacatgctt ... ttcaacacagGTGTATGACACTTGGAGGAAAATGTGGCTTTCTAAAGGAGAGGAGCATGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaagtttttatctctgttttcaatacaaataaaaatgtgtgattttcaacacagGTGTATGACACTTGGAGGAAAATGTGGCTTTCTAAAGGAGAGGAGCATGAGGCAGGGAAGAAGGAGTTTATCTCTATCTTTAAGCAGCTAGAAGAGACAC
                                           ttttc  CT-rich tract
               tgttttcaatacaaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
taggcaaaatcgatatacaaagaataaataacctagtgataaaaaaaaagtttttatctctgttttcaatacaaataaaaatgtgtgattttcaacacagGTGTATGACACTTGGAGGAAAATGTGGCTTTCTAAAGGAGAGGAGCATGAGGCAGGGAAGAAGGAGTTTATCTCTATCTTTAAGCAGCTAGAAGAGACAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA
- - caaaatc
- - - - - - - - - -aagaataa
- - - - - - - - - - - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgtga