1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...agattctgtttaatatgtttatatgcatactagtacaaaaagaaaagaaattatagattctgaggcatgttttttcttgtcctgtgatatgttcatgcagATAGTTTAGTTGTCAAGTCATAAATCAGTATCATCACTTTAAATTTCATTAGAAGCTGTCAAAATGTCACGGAAGGGTTTGATGGAGCAAGACCTGAGTA
species | Glycine max |
transcript | GLYMA08G18240.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCATCGTCGAGAGAAGCGTGAGAGACTTCTCGTTTATGATGAGGGCTAAG ATAGTTTAGTTGTCAAGTCATAAATCAGTATCATCACTTTAAATTTCATTAEST: gi|208293071|gb|GE089895.1|GE089895
genomic: CCATCGTCGAGAGAAGCGTGAGAGACTTCTCGTTTATGATGAGAGCTAAGgttaaatcat ... gttcatgcagATAGTTTAGTTGTCAAGTCATAAATCAGTATCATCACTTTAAATTTCATTA
EST: CCATCGTCGAGAGAAGCGTGAGAGACTTCTCGTTTATGATGAGAGCTAAG ATAGTTTAGTTGTCAAGTCATAAATCAGTATCATCACTTTAAATTTCATTAEST: gi|17023024|gb|BM094058.1|BM094058
genomic: CCATCGTCGAGAGAAGCGTGAGAGACTTCTCGTTTATGATGAGAGCTAAGgttaaatcat ... gttcatgcagATAGTTTAGTTGTCAAGTCATAAATCAGTATCATCACTTTAAATTTCATTA
EST: CCATCGTCGAGAGAAGCGTGAGAGACTTCTCGTTTATGATGAGAGCTAAG ATAGTTTAGTTGTCAAGTCATAAATCAGTATCATCACTTTAAATTTCATTAEST: gi|17023965|gb|BM094999.1|BM094999
genomic: CCATCGTCGAGAGAAGCGTGAGAGACTTCTCGTTTATGATGAGAGCTAAGgttaaatcat ... gttcatgcagATAGTTTAGTTGTCAAGTCATAAATCAGTATCATCACTTTAAATTTCATTA
EST: CCATCGTCGAGAGAAGCGTGAGAGACTTCTCGTTTATGATGAGAGCTAAG ATAGTTTAGTTGTCAAGTCATAAATCAGTATCATCACTTTAAATTTCATTAEST: gi|7478465|gb|AW666276.1|AW666276
genomic: CCATCGTCGAGAGAAGCGTGAGAGACTTCTCGTTTATGATGAGAGCTAAGgttaaatcat ... gttcatgcagATAGTTTAGTTGTCAAGTCATAAATCAGTATCATCACTTTAAATTTCATTA
EST: GAGACTTCTCGTTTATGATGAGAGCTAAG ATAGTTTAGTTGTCAAGTCATAAATCAGTATCATCACTTTAAATTTCATTAEST: gi|209708854|gb|BW673890.1|BW673890
genomic: GAGACTTCTCGTTTATGATGAGAGCTAAGgttaaatcat ... gttcatgcagATAGTTTAGTTGTCAAGTCATAAATCAGTATCATCACTTTAAATTTCATTA
EST: CCATCGTCGAGAGAAGCGTGAGAGACTTCTCGTTTATGATGAGAGCTAAG ATAGTTTAGTTGTCAAGTCATAAATCAGTATCATCACTTTAAATTTCATTAEST: gi|213606648|gb|DB959060.1|DB959060
genomic: CCATCGTCGAGAGAAGCGTGAGAGACTTCTCGTTTATGATGAGAGCTAAGgttaaatcat ... gttcatgcagATAGTTTAGTTGTCAAGTCATAAATCAGTATCATCACTTTAAATTTCATTA
EST: CCATCGTCGAGAGAAGCGTGAGAGACTTCTCGTTTATGATGAGAGCTAAG ATAGTTTAGTTGTCAAGTCATAAATCAGTATCATCACTTTAAATTTCATTAEST: gi|193425501|gb|FK389978.1|FK389978
genomic: CCATCGTCGAGAGAAGCGTGAGAGACTTCTCGTTTATGATGAGAGCTAAGgttaaatcat ... gttcatgcagATAGTTTAGTTGTCAAGTCATAAATCAGTATCATCACTTTAAATTTCATTA
EST: CCATCGTCGAGAGAAGCGTGAGAGACTTCTCGTTTATGATGAGAGCTAAG ATAGTTTAGTTGTCAAGTCATAAATCAGTATCATCACTTTAAATTTCATTAEST: gi|23727056|gb|BU761544.1|BU761544
genomic: CCATCGTCGAGAGAAGCGTGAGAGACTTCTCGTTTATGATGAGAGCTAAGgttaaatcat ... gttcatgcagATAGTTTAGTTGTCAAGTCATAAATCAGTATCATCACTTTAAATTTCATTA
EST: AGAGAAGCGTGAGAGACTTCTCGTTTATGATGAGAGCTAAG ATAGTTTAGTTGTCAAGTCATAAATCAGTATCATCACTTTAAATTTCATTAEST: gi|193667049|gb|FK612549.1|FK612549
genomic: AGAGAAGCGTGAGAGACTTCTCGTTTATGATGAGAGCTAAGgttaaatcat ... gttcatgcagATAGTTTAGTTGTCAAGTCATAAATCAGTATCATCACTTTAAATTTCATTA
EST: CGTGAGAGACTTCTCGTTTATGATGAGAGCTAAG ATAGTTTAGTTGTCAAGTCATAAATCAGTATCATCACTTTAAATTTCATTAEST: gi|15663764|gb|BI701135.1|BI701135
genomic: CGTGAGAGACTTCTCGTTTATGATGAGAGCTAAGgttaaatcat ... gttcatgcagATAGTTTAGTTGTCAAGTCATAAATCAGTATCATCACTTTAAATTTCATTA
EST: GCGTGAGAGACTTCTCGTTTATGATGAGAGCTAAG ATAGTTTAGTTGTCAAGTCATAAATCAGTATCATCACTTTAAATTTCATTA
genomic: GCGTGAGAGACTTCTCGTTTATGATGAGAGCTAAGgttaaatcat ... gttcatgcagATAGTTTAGTTGTCAAGTCATAAATCAGTATCATCACTTTAAATTTCATTA
agaaattatagattctgaggcatgttttttcttgtcctgtgatatgttcatgcagATAGTTTAGTTGTCAAGTCATAAATCAGTATCATCACTTTAAATTTCATTAGAAGCTGTCAAAATGTCACGGAAGGGTTTGATGGAGCAAGACCTGAGTA
ttatagatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agattctgtttaatatgtttatatgcatactagtacaaaaagaaaagaaattatagattctgaggcatgttttttcttgtcctgtgatatgttcatgcagATAGTTTAGTTGTCAAGTCATAAATCAGTATCATCACTTTAAATTTCATTAGAAGCTGTCAAAATGTCACGGAAGGGTTTGATGGAGCAAGACCTGAGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA