1 5' 3' | 2 5' 3' | 3 5' 3' |
...tttttgctctctttaaatatctcttttttctttttctagtttttgttgcctgcattaagtatcttgctatttagctaacgttggtgttttaatttttcagCTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG
species | Glycine max |
transcript | GLYMA08G18110.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCCGCTCTCTCTCTCCTTCTCGCTCTTTCAG CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATGEST: gi|33390610|gb|CA853805.1|CA853805
genomic: GCCGCTCTCTCTCTCCTTCTCGCTCTTTCAGgttcggttcc ... aatttttcagCTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG
EST: CTCTCCTTCTCGCTCTTTCAG CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATGEST: gi|7684880|gb|AW755528.1|AW755528
genomic: CTCTCCTTCTCGCTCTTTCAGgttcggttcc ... aatttttcagCTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG
EST: TCTCTCCTTCTCGCTCTTTCAG CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATGEST: gi|120529990|gb|EH258124.1|EH258124
genomic: TCTCTCCTTCTCGCTCTTTCAGgttcggttcc ... aatttttcagCTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG
EST: CTCTCTCCTTCTCGCTCTTTCAG CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATGEST: gi|254325442|gb|GR838323.1|GR838323
genomic: CTCTCTCCTTCTCGCTCTTTCAGgttcggttcc ... aatttttcagCTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG
EST: CTCGCTCTTTCAG CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATGEST: gi|5605835|gb|AI899933.1|AI899933
genomic: CTCGCTCTTTCAGgttcggttcc ... aatttttcagCTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG
EST: TCTCCTTCTCGCTCTTTCAG CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATGEST: gi|14259251|gb|BG882159.1|BG882159
genomic: TCTCCTTCTCGCTCTTTCAGgttcggttcc ... aatttttcagCTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG
EST: CTCCTTCTCGCTCTTTCAG CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATGEST: gi|209701834|gb|BW661327.1|BW661327
genomic: CTCCTTCTCGCTCTTTCAGgttcggttcc ... aatttttcagCTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG
EST: GCCGCTCTCTCTCTCCTTCTCGCTCTTTCAG CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATGEST: gi|254342547|gb|GR858709.1|GR858709
genomic: GCCGCTCTCTCTCTCCTTCTCGCTCTTTCAGgttcggttcc ... aatttttcagCTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG
EST: CTCTCTCTCTCCTTCTCGCTCTTTCAG CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATGEST: gi|254342212|gb|GR853349.1|GR853349
genomic: CTCTCTCTCTCCTTCTCGCTCTTTCAGgttcggttcc ... aatttttcagCTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG
EST: CGCTCTCTCTCTCCTTCTCGCTCTTTCAG CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATGEST: gi|22931766|gb|BU548905.1|BU548905
genomic: CGCTCTCTCTCTCCTTCTCGCTCTTTCAGgttcggttcc ... aatttttcagCTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG
EST: CTCCTTCTCGCTCTTTCAG CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATGEST: gi|6454158|gb|AW184906.1|AW184906
genomic: CTCCTTCTCGCTCTTTCAGgttcggttcc ... aatttttcagCTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG
EST: TCTCCTTCTCGCTCTTTCAG CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG
genomic: TCTCCTTCTCGCTCTTTCAGgttcggttcc ... aatttttcagCTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG
ttgcctgcattaagtatcttgctatttagctaacgttggtgttttaatttttcagCTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG
tttttc CT-rich tract
tgttttaatttttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttttgctctctttaaatatctcttttttctttttctagtttttgttgcctgcattaagtatcttgctatttagctaacgttggtgttttaatttttcagCTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG
- - tgctctc
- - - - - - - - - - - - - - - - - - - - - - - - - tgcatta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttgcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttggtg