1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaactgcattgccccctctctctctagagttccttcccatttcaatctgttgttgcagcatttgttttcatgttcatttttctcctgcgtgattttgttgcattgcacgtgattatgctaaaaatctgattttgataggaattctgagggccccagaagctgatttgatctgggtttttctttgttttgtgttgaagGGAAGAACTTTTTTTTTGTGTGTGTTTTTGGTGGTGAGTTTGTAAGAAGCAATGGCACGCAAGAAGATCAGAGAGTATGACTCCAAGAGATTGTTGAAGG
species | Glycine max |
transcript | GLYMA08G17010.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCCACCAATCTCCAACCTTCTTCTCCATTGTTCCGTTTCTCTCTCCAACG GGAAGAACNNNNNNNNNGTGTGTGTTTTTGGTGGTGAGTTTGTAAGAAGCAEST: gi|192294349|gb|FG987278.1|FG987278
genomic: TCCACCAATCTCCAACCTTCTTCTCCATTGTTCCGTTTCTCTCTCCAACGgtaactgcat ... tgtgttgaagGGAAGAACTTTTTTTTTGTGTGTGTTTTTGGTGGTGAGTTTGTAAGAAGCA
EST: TCCACCAATCTCCAACCTTCTTCTCCATTGTTCCGTTTCTCTCTCCAACG GGAAGAAC-NNNNNNNNGTGTGTGTTTTTGGTGGTGAGTTTGTAAGAAGCA
genomic: TCCACCAATCTCCAACCTTCTTCTCCATTGTTCCGTTTCTCTCTCCAACGgtaactgcat ... tgtgttgaagGGAAGAACTTTTTTTTTGTGTGTGTTTTTGGTGGTGAGTTTGTAAGAAGCA
tctgagggccccagaagctgatttgatctgggtttttctttgttttgtgttgaagGGAAGAACTTTTTTTTTGTGTGTGTTTTTGGTGGTGAGTTTGTAAGAAGCAATGGCACGCAAGAAGATCAGAGAGTATGACTCCAAGAGATTGTTGAAGG
tttttctttgttttgt CT-rich tract
tttttctttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaactgcattgccccctctctctctagagttccttcccatttcaatctgttgttgcagcatttgttttcatgttcatttttctcctgcgtgattttgttgcattgcacgtgattatgctaaaaatctgattttgataggaattctgagggccccagaagctgatttgatctgggtttttctttgttttgtgttgaagGGAAGAACTTTTTTTTTGTGTGTGTTTTTGGTGGTGAGTTTGTAAGAAGCAATGGCACGCAAGAAGATCAGAGAGTATGACTCCAAGAGATTGTTGAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
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