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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agtaacaccagtgaactctgcaatctgacaaagaaaaggttcctagcccttcaatttaactttatgttcatcagtgtcttctttgattgctcttttgaagGTCCATGGTGAGTTGCATCACGCTGAACTCTACAAGCAGAGTGGCACTGGCTAGCTGTCGCAATGCTTTTACCATG

Basic information

species Glycine max
transcript GLYMA08G16870.4
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G16870.4 (Glycine max), 3'ss of exon 1
lower sequence: Vv13s0156g00080.t01 (Vitis vinifera), 3'ss of exon 5
------------------------------------------------------------------------------------------------agtaacaccagtgaactctgcaatctgacaaagaaaaggttcctagcccttcaatttaactttatgttcatcagtgtcttctttgattgctctt-ttgaagGTCCATGGTGAGTTGCATCACGCTGAACTCTACAAGCAGAGTGGCACTGGCTAGCTGTCGCAATGCTTTTACCATG
                                                                                                  |       || | | |     | ||  | | | | || ||   | | ||  |  ||  ||||| |     | | |   |    ||||||||| ||||||||| ||||||| ||||||||||||||| || ||||||||||| |  || ||||||||||| ||||||||||| |||
gtaatgaaccttcttcagctacaccaagttaaaaaagtgtcatagttttaagcttaagagagatgaaaggcaccattgtgcttacgttcttcttcagtttttttttgttatccccatgttttgggagaaagagggctct--gtcattggacata--tttatct-----aatatgaaccacaattgctcttgttgaagGTCTATGGTGAATTGCATCACGCTGAATTCAACAAGCAGAGTAGTTCTTGCTAGCTGTCGTAATGCTTTTACAATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18041179|gb|BM309473.1|BM309473
EST:     TATGCAGCAATCTTCAATGTGGGCTGGGCCGCTACTCAGGTTTCACACAT                         GTCCATGGTGAGT
genomic: TATGCAGCAATCTTCAATGTGGGCTGGGCCGCTACTCAGGTTTCACACATgtaataattt ... tcttttgaagGTCCATGGTGAGT
EST: gi|6667043|gb|AW278502.1|AW278502
EST:     TATGCAGCAATCTTCAATGTGGGCTGGGCCGCTACTCAGGTTTCACACAT                         GTCCATGGTGAGTTGCATCACGCTGAACTCTACAAGCAGAGTGGCACTGGC
genomic: TATGCAGCAATCTTCAATGTGGGCTGGGCCGCTACTCAGGTTTCACACATgtaataattt ... tcttttgaagGTCCATGGTGAGTTGCATCACGCTGAACTCTACAAGCAGAGTGGCACTGGC
EST: gi|18040825|gb|BM309119.1|BM309119
EST:     TATGCAGCAATCTTCAATGTGGGCTGGGCCGCTACTCAGGTTTCACACAT                         GTCCATGGTGAGTTGCATCACGCTGAACTCTACAAGCAGAGTGGCACTGGC
genomic: TATGCAGCAATCTTCAATGTGGGCTGGGCCGCTACTCAGGTTTCACACATgtaataattt ... tcttttgaagGTCCATGGTGAGTTGCATCACGCTGAACTCTACAAGCAGAGTGGCACTGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcccttcaatttaactttatgttcatcagtgtcttctttgattgctcttttgaagGTCCATGGTGAGTTGCATCACGCTGAACTCTACAAGCAGAGTGGCACTGGCTAGCTGTCGCAATGCTTTTACCATG
                                         ttgctctttt  CT-rich tract
       aatttaactttatgtt  TA-rich tract