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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatctactcattctctttccttttcctagggttcctttcttctctttcattttcatctccacttatttaccctttcacttcgtttttcttccagGAAATGCACGCGCATCGAGATTCACCTGCTTTCTCCCCAAGGCTTGCAG

Basic information

species Glycine max
transcript GLYMA08G13680.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G13680.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os05g51480.1 (Oryza sativa), 3'ss of exon 1
gtatctactcattctctttccttttcctagggttcctttcttctctttcattttcatctccacttatttaccctttcacttcgtttt-------tcttccagGAAATGCACGCGCATCGAGATTCACCTGCTTTCTCCCCAAGGCTTGCAG
  |||| ||   | | | | |||   ||  | |||| | ||| |      | | ||| | || |  |||||    ||    | | |        ||||||||||||||||| || |||||||| ||| ||||| |||| |||||| | |||
-catct-ctttctatatgttcttcaacttagattccctgcttgttggctctctgcatattcattcctttactaactctgcgcatgtgctgcaaatcttccagGAAATGCACCCGTATCGAGATCCACTTGCTTACTCCTCAAGGCCTCCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209714348|gb|BW665598.1|BW665598
EST:     TCCTGCGTCGGCAATTTCACCAGTCCTCAAGACCTCAATCTCATCATCGC                         GAAATGCACGCGCATCGAGATTCACCTGCTTTCTCCCCAAGGCTTGCAG
genomic: TCCTGCGTCGGCAATTTCACCAGTCCTCAAGACCTCAATCTCATCATCGCgtatctactc ... tttcttccagGAAATGCACGCGCATCGAGATTCACCTGCTTTCTCCCCAAGGCTTGCAG
EST: gi|213615293|gb|DB963487.1|DB963487
EST:     TCCTGCGTCGGCAATTTCACCAGTCCTCAAGACCTCAATCTCATCATCGC                         GAAATGCACGCGCATCGAGATTCACCTGCTTTCTCCCCAAGGCTTGCAG
genomic: TCCTGCGTCGGCAATTTCACCAGTCCTCAAGACCTCAATCTCATCATCGCgtatctactc ... tttcttccagGAAATGCACGCGCATCGAGATTCACCTGCTTTCTCCCCAAGGCTTGCAG
EST: gi|213589389|gb|DB961722.1|DB961722
EST:     TCCTGCGTCGGCAATTTCACCAGTCCTCAAGACCTCAATCTCATCATCGC                         GAAATGCACGCGCATCGAGATTCACCTGCTTTCTCCCCAAGGCTTGCAG
genomic: TCCTGCGTCGGCAATTTCACCAGTCCTCAAGACCTCAATCTCATCATCGCgtatctactc ... tttcttccagGAAATGCACGCGCATCGAGATTCACCTGCTTTCTCCCCAAGGCTTGCAG
EST: gi|213590572|gb|DB968122.1|DB968122
EST:     TCCTGCGTCGGCAATTTCACCAGTCCTCAAGACCTCAATCTCATCATCGC                         GAAATGCACGCGCATCGAGATTCACCTGCTTTCTCCCCAAGGCTTGCAG
genomic: TCCTGCGTCGGCAATTTCACCAGTCCTCAAGACCTCAATCTCATCATCGCgtatctactc ... tttcttccagGAAATGCACGCGCATCGAGATTCACCTGCTTTCTCCCCAAGGCTTGCAG
EST: gi|209717579|gb|BW679686.1|BW679686
EST:     TCCTGCGTCGGCAATTTCACCAGTCCTCAAGACCTCAATCTCATCATCGC                         GAAATGCACGCGCATCGAGATTCACCTGCTTTCTCCCCAAGGCTTGCAG
genomic: TCCTGCGTCGGCAATTTCACCAGTCCTCAAGACCTCAATCTCATCATCGCgtatctactc ... tttcttccagGAAATGCACGCGCATCGAGATTCACCTGCTTTCTCCCCAAGGCTTGCAG
EST: gi|209723170|gb|BW675116.1|BW675116
EST:     TCCTGCGTCGGCAATTTCACCAGTCCTCAAGACCTCAATCTCATCATCGC                         GAAATGCACGCGCATCGAGATTCACCTGCTTTCTCCCCAAGGCTTGCAG
genomic: TCCTGCGTCGGCAATTTCACCAGTCCTCAAGACCTCAATCTCATCATCGCgtatctactc ... tttcttccagGAAATGCACGCGCATCGAGATTCACCTGCTTTCTCCCCAAGGCTTGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctctttcattttcatctccacttatttaccctttcacttcgtttttcttccagGAAATGCACGCGCATCGAGATTCACCTGCTTTCTCCCCAAGGCTTGCAG
                tctccacttatttacc  CT-rich tract
     tttcatttt  TA-rich tract