1 5' 3' | 2 5' 3' | 3 5' 3' |
...gtaattctggttggctcttgaatgacaaccttctgatatcagctgttatagaggtctattacttgtctcttggtttctaatagtaatttgtttactttagGTGACATCACCGTATGGAAACAATCTTCATCACAAGGAGAACACAACACATGGTAGTATTGCATTTACAACTCAAGAGGCTGGGAACTACCTTGCATGCT
species | Glycine max |
transcript | GLYMA08G13470.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACGTCGTTATCCCCAGTGATCACGCCCACAACCTCACCATCGCCGTCAAG GTGACATCACCGTATGGAAACAATCTTCATCACAAGGAGAACACAACACATEST: gi|193674695|gb|FK620363.1|FK620363
genomic: ACGTCGTTATCCCCAGTGATCACGCCCACAACCTCACCATCGCCGTCAAGgtaccctttt ... tttactttagGTGACATCACCGTATGGAAACAATCTTCATCACAAGGAGAACACAACACAT
EST: ACGTCGTTATCCCCAGTGATCACGCCCACAACCTCACCATCGCCGTCAAG GTGACATCACCGTATGGAAACAATCTTCATTCTACAAGGAGAACACAACACEST: gi|151394089|gb|EV263960.1|EV263960
genomic: ACGTCGTTATCCCCAGTGATCACGCCCACAACCTCACCATCGCCGTCAAGgtaccctttt ... tttactttagGTGACATCACCGTATGGAAACAATCTTCA-TC-ACAAGGAGAACACAACAC
EST: ACGTCGTTATCCCCAGTGATCACGCCCACAACCTCACCATCGCCGTCAAG GTGACATCACCGTATGGAAACAATCTTCATCACAAGGAGAACACAACACATEST: gi|192306615|gb|FG998055.1|FG998055
genomic: ACGTCGTTATCCCCAGTGATCACGCCCACAACCTCACCATCGCCGTCAAGgtaccctttt ... tttactttagGTGACATCACCGTATGGAAACAATCTTCATCACAAGGAGAACACAACACAT
EST: ACGTCGTTATCCCCAGTGATCACGCCCACAACCTCACCATCGCCGTCAAG GTGACATCACCGTATGGAAACAATCTTCATCACAAGGAGAACACAACACATEST: gi|209708754|gb|BW683778.1|BW683778
genomic: ACGTCGTTATCCCCAGTGATCACGCCCACAACCTCACCATCGCCGTCAAGgtaccctttt ... tttactttagGTGACATCACCGTATGGAAACAATCTTCATCACAAGGAGAACACAACACAT
EST: ACGTCGTTATCCCCAGTGATCACGCCCACAACCTCACCATCGCCGTCAAG GTGACATCACCGTATGGAAACAATCTTCATCACAAGGAGAACACAACACATEST: gi|298176386|gb|HO023087.1|HO023087
genomic: ACGTCGTTATCCCCAGTGATCACGCCCACAACCTCACCATCGCCGTCAAGgtaccctttt ... tttactttagGTGACATCACCGTATGGAAACAATCTTCATCACAAGGAGAACACAACACAT
EST: ACGTCGTTATCCCCAGTGATCACGCCCACAACCTCACCATCGCCGTCAAG GTGACATCACCGTATGGAAACAATCTTCATCACAAGGAGAACACAACACATEST: gi|298170194|gb|HO018818.1|HO018818
genomic: ACGTCGTTATCCCCAGTGATCACGCCCACAACCTCACCATCGCCGTCAAGgtaccctttt ... tttactttagGTGACATCACCGTATGGAAACAATCTTCATCACAAGGAGAACACAACACAT
EST: ACGTCGTTATCCCCAGTGATCACGCCCACAACCTCACCATCGCCGTCAAG GTGACATCACCGTATGGAAACAATCTTCGTCACAAGGAGAACACAACACATEST: gi|298164598|gb|HO014243.1|HO014243
genomic: ACGTCGTTATCCCCAGTGATCACGCCCACAACCTCACCATCGCCGTCAAGgtaccctttt ... tttactttagGTGACATCACCGTATGGAAACAATCTTCATCACAAGGAGAACACAACACAT
EST: ACGTCGTTATCCCCAGTGATCACGCCCACAACCTCACCATCGCCGTTAAG GTGACATCACCGTATGGAAACAATCTTCATCACAAGGAGAACACAACACATEST: gi|298173881|gb|HO017217.1|HO017217
genomic: ACGTCGTTATCCCCAGTGATCACGCCCACAACCTCACCATCGCCGTCAAGgtaccctttt ... tttactttagGTGACATCACCGTATGGAAACAATCTTCATCACAAGGAGAACACAACACAT
EST: ACGTCGTTATCCCCAGTGATCACGCCCACAACCTCACCATCGCCGTCAAG GTGACATCACCGTATGGAAACAATCTTCATCACAAGGAGAACACAACACATEST: gi|298176262|gb|HO015667.1|HO015667
genomic: ACGTCGTTATCCCCAGTGATCACGCCCACAACCTCACCATCGCCGTCAAGgtaccctttt ... tttactttagGTGACATCACCGTATGGAAACAATCTTCATCACAAGGAGAACACAACACAT
EST: ACGTCGTTATCCCCAGTGATCACGCCCACAACCTCACCATCGCCGTCAAG GTGACATCACCGTATGGAAACAATCTTCATCACAAGGAGAGCACAACACAT
genomic: ACGTCGTTATCCCCAGTGATCACGCCCACAACCTCACCATCGCCGTCAAGgtaccctttt ... tttactttagGTGACATCACCGTATGGAAACAATCTTCATCACAAGGAGAACACAACACAT
ttatagaggtctattacttgtctcttggtttctaatagtaatttgtttactttagGTGACATCACCGTATGGAAACAATCTTCATCACAAGGAGAACACAACACATGGTAGTATTGCATTTACAACTCAAGAGGCTGGGAACTACCTTGCATGCT
ttctaat putative branch site (score: 2)
tttacttt putative PPT
taatagtaatttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattctggttggctcttgaatgacaaccttctgatatcagctgttatagaggtctattacttgtctcttggtttctaatagtaatttgtttactttagGTGACATCACCGTATGGAAACAATCTTCATCACAAGGAGAACACAACACATGGTAGTATTGCATTTACAACTCAAGAGGCTGGGAACTACCTTGCATGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - -tggttgg
- - - - - - - - - tgaatga
- - - - - - - - - - - - - - ccttctg
- - - - - - - - - - - - - - - - - - - -cagctgt