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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtactcatcactttcctatttctttcattttcttttctatagatccaattctctcatgctaattcctatttcttgttcgattcagGTTCTGCACATGGACAGGAATGACTATTACGGAGGAGAATCCACTTCGCTCAATCTTATTCAGGTCTTTTTTCATATTTTCTTTCTTATCTTTCATTTCT

Basic information

species Glycine max
transcript GLYMA08G13300.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G13300.2 (Glycine max), 3'ss of exon 1
lower sequence: Vv05s0094g01550.t01 (Vitis vinifera), 3'ss of exon 1
--gtacgtactcatcacttt-----cctatttctttcatt----ttcttttctatagatccaattctctcatgctaattcctatttcttgttcgattcagGTTCTGCACATGGACAGGAATGACTATTACGGAGGAGAATCCACTTCGCTCAATCTTATTCAGGTCTTTTTTCATATTTTCTTTCTTATCTTTCATTTCT
   |   | |  |||  |||     || |  |  | || |    || || |||    |  || ||   | ||| | |    |   | |  |  ||  ||||||||||||||||| || ||||||||||| |||||||| || | ||| |||||||||||||||                                     
cattgtatccctatcgatttgaattccaaagtgatgcactgacattattatctgctcaagcagttggttgatgattaaaattgcatatattgtgaaccagGTTCTGCACATGGATAGAAATGACTATTATGGAGGAGAGTCAAGTTCACTCAATCTTATTCAG-------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193706374|gb|FK648868.1|FK648868
EST:     GTCTCAAGGAGTGCATTCTCAGCGGTCTTCTCTCCGTCGATGGCCTCAAG                         GTTCTGCACATGGACAGGAATGACTATTAC
genomic: GTCTCAAGGAGTGCATTCTCAGCGGTCTTCTCTCCGTCGATGGCCTCAAGgtacgtactc ... ttcgattcagGTTCTGCACATGGACAGGAATGACTATTAC
EST: gi|6667361|gb|AW278812.1|AW278812
EST:     GTCTCAAGGAGTGCATCCTCAGCGGTCTTCTCTCCGTCGATGGCCTCAAG                         GTTCTGCACATGGACAGGAATGAC
genomic: GTCTCAAGGAGTGCATTCTCAGCGGTCTTCTCTCCGTCGATGGCCTCAAGgtacgtactc ... ttcgattcagGTTCTGCACATGGACAGGAATGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttttctatagatccaattctctcatgctaattcctatttcttgttcgattcagGTTCTGCACATGGACAGGAATGACTATTACGGAGGAGAATCCACTTCGCTCAATCTTATTCAGGTCTTTTTTCATATTTTCTTTCTTATCTTTCATTTCT
                          tgctaat  putative branch site (score: 2)
                                ttcctatttcttgttc  CT-rich tract
                                    tatttctt  TA-rich tract