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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactctctctctctctctctctctctctccgtttcttccataatgaaaaacgaaacaaccatttctaacatggttccatctctgtactgtgaatgcagTTGTGGCATGCCAAGCCGTTGCCAACATCGTCAAAAGCTCTTTAGGCCCCGTTGGCCTCGACAAG

Basic information

species Glycine max
transcript GLYMA08G12970.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33389970|gb|CA853177.1|CA853177
EST:     TGACATCGCCGGCGAGCGGCAGTCCGGCCAAGACGTTCGCACCCAAAACG                         TTGTGGCATGCCAAGCCGTTGCCAACATCGTCAAAAGCTCTTTAGGCCCCG
genomic: TGACATCGCCGGCGAGCGGCAGTCCGGCCAAGACGTTCGCACCCAAAACGgtactctctc ... gtgaatgcagTTGTGGCATGCCAAGCCGTTGCCAACATCGTCAAAAGCTCTTTAGGCCCCG
EST: gi|24205364|gb|BU964617.1|BU964617
EST:     TGACATCGCCGGCGAGCGGCAGTCCGGCCAAGACGTTCGCACCCAAAACG                         TTGTGGCATGCCAAGCCGTTGCCAACATCGTCAAAAGCTCTTTAGGCCCCG
genomic: TGACATCGCCGGCGAGCGGCAGTCCGGCCAAGACGTTCGCACCCAAAACGgtactctctc ... gtgaatgcagTTGTGGCATGCCAAGCCGTTGCCAACATCGTCAAAAGCTCTTTAGGCCCCG
EST: gi|6070782|gb|AW100169.1|AW100169
EST:     TGACATCGCCGGCGAGCGGCAGTCCGGCCAAGACGTTCGCACCCAAAACG                         TTGTGGCATGCCAAGCCGTTGCCAACATCGTCAAAAGCTCTTTAGGCCCCG
genomic: TGACATCGCCGGCGAGCGGCAGTCCGGCCAAGACGTTCGCACCCAAAACGgtactctctc ... gtgaatgcagTTGTGGCATGCCAAGCCGTTGCCAACATCGTCAAAAGCTCTTTAGGCCCCG
EST: gi|120533836|gb|EH261969.1|EH261969
EST:     TGACATCGCCGGCGAGCGGCAGTCCGGCCAAGACGTTCGCACCCAAAACG                         TTGTGGCATGCCAAGCCGTTGCCAACATCGTCAAAAGCTCTTTAGGCCCCG
genomic: TGACATCGCCGGCGAGCGGCAGTCCGGCCAAGACGTTCGCACCCAAAACGgtactctctc ... gtgaatgcagTTGTGGCATGCCAAGCCGTTGCCAACATCGTCAAAAGCTCTTTAGGCCCCG
EST: gi|18040032|gb|BM308326.1|BM308326
EST:     TGACATCGCCGGCGAGCGGCAGTCCGGCCAAGACGTTCGCACCCAAAACG                         TTGTGGCATGCCAAGCCGTTGCCAACATCGTCAAAAGCTCTTTAGGCCCCG
genomic: TGACATCGCCGGCGAGCGGCAGTCCGGCCAAGACGTTCGCACCCAAAACGgtactctctc ... gtgaatgcagTTGTGGCATGCCAAGCCGTTGCCAACATCGTCAAAAGCTCTTTAGGCCCCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaaaaacgaaacaaccatttctaacatggttccatctctgtactgtgaatgcagTTGTGGCATGCCAAGCCGTTGCCAACATCGTCAAAAGCTCTTTAGGCCCCGTTGGCCTCGACAAG
                   ttctaac  putative branch site (score: 1)
 atttctaa  TA-rich tract