1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atgcatgaagacttggtgcagcttaaacaatttctgtcaaaacgtgtagtttggtgattttatatatatatattggtgatgaatattcaattcaatgcagGAACAGGAAGGGATAAGCCTGACTTTCTGGCCACAGTGGATGTGGATCCAAGCTCTCCAACGTATTCAAAAGTTATCCATAGGTTACCTGTACCTTATTT
species | Glycine max |
transcript | GLYMA08G11400.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CATGTCTGGTCCCAAAGAGACTCTCCTTTATGTCACTGCTATCTACTCAG GAACAGGAAGGGATAAGCCTGACTTTCTGGCCACAGTGGATGTGGATCCAAEST: gi|213606564|gb|DB959018.1|DB959018
genomic: CATGTCTGGTCCCAAAGAGACTCTCCTTTATGTCACTGCTATCTACTCAGgtaccaaaaa ... ttcaatgcagGAACAGGAAGGGATAAGCCTGACTTTCTGGCCACAGTGGATGTGGATCCAA
EST: CATGTCTGGTCCCAAAGAGACTCTCCTTTATGTCACTGCTATCTACTCAG GAACAGGAAGGGATAAGCCTGACTTTCTGGCCACAGTGGATGTGGATCCAAEST: gi|213595227|gb|DB962366.1|DB962366
genomic: CATGTCTGGTCCCAAAGAGACTCTCCTTTATGTCACTGCTATCTACTCAGgtaccaaaaa ... ttcaatgcagGAACAGGAAGGGATAAGCCTGACTTTCTGGCCACAGTGGATGTGGATCCAA
EST: CATGTCTGGTCCCAAAGAGACTCTCCTTTATGTCACTGCTATCTACTCAG GAACAGGAAGGGATAAGCCTGACTTTCTGGCCACAGTGGATGTGGATCCAAEST: gi|298190089|gb|HO032210.1|HO032210
genomic: CATGTCTGGTCCCAAAGAGACTCTCCTTTATGTCACTGCTATCTACTCAGgtaccaaaaa ... ttcaatgcagGAACAGGAAGGGATAAGCCTGACTTTCTGGCCACAGTGGATGTGGATCCAA
EST: CATGTCTGGTCCCAAAGAGACTCTCCTTTATGTCACTGCTATCTACTCAG GAACAGGAAGGGATAAGCCTGACTTTCTGGCCACAGTGGATGTGGATCCAAEST: gi|298165728|gb|HO008699.1|HO008699
genomic: CATGTCTGGTCCCAAAGAGACTCTCCTTTATGTCACTGCTATCTACTCAGgtaccaaaaa ... ttcaatgcagGAACAGGAAGGGATAAGCCTGACTTTCTGGCCACAGTGGATGTGGATCCAA
EST: CATGTCTGGTCCCAAAGAGACTCTCCTTTATGTCACTGCTATCTACTCAG GAACAGGAAGGGATAAGCCTGACTTTCTGGCCACAGTGGATGTGGATCCAAEST: gi|213591586|gb|DB955794.1|DB955794
genomic: CATGTCTGGTCCCAAAGAGACTCTCCTTTATGTCACTGCTATCTACTCAGgtaccaaaaa ... ttcaatgcagGAACAGGAAGGGATAAGCCTGACTTTCTGGCCACAGTGGATGTGGATCCAA
EST: CATGTCTGGTCCCAAAGAGACTCTCCTTTATGTCACTGCTATCTACTCAG GAACAGGAAGGGATAAGCCTGACTTTCTGGCCACAGTGGATGTGGATCCAA
genomic: CATGTCTGGTCCCAAAGAGACTCTCCTTTATGTCACTGCTATCTACTCAGgtaccaaaaa ... ttcaatgcagGAACAGGAAGGGATAAGCCTGACTTTCTGGCCACAGTGGATGTGGATCCAA
gtagtttggtgattttatatatatatattggtgatgaatattcaattcaatgcagGAACAGGAAGGGATAAGCCTGACTTTCTGGCCACAGTGGATGTGGATCCAAGCTCTCCAACGTATTCAAAAGTTATCCATAGGTTACCTGTACCTTATTT
attttatatatatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgcatgaagacttggtgcagcttaaacaatttctgtcaaaacgtgtagtttggtgattttatatatatatattggtgatgaatattcaattcaatgcagGAACAGGAAGGGATAAGCCTGACTTTCTGGCCACAGTGGATGTGGATCCAAGCTCTCCAACGTATTCAAAAGTTATCCATAGGTTACCTGTACCTTATTT
- gcatgaa
- - - - - - -tggtgca
- - - - - - - - - - - - - - - -ttctgtc
- - - - - - - - - - - - - - - - - - - - - - - - -tttggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtgatg