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...atagtaatctaaaaatatctattttttaggtataaaaacttaatttttacgaagatggaggtgtatccagcgagtaataactcttcattgctttttttagATGGGAATTGTGGGGGAGAAACTAGATATAGATTTTGTGATCTCCACAGGTGACAATTTTTACGAAGATGGACTAAAAGGGGTTGATGATCCAGCATTCT
species | Glycine max |
transcript | GLYMA08G09910.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAGATTGGGGAAGAAAAGGAACCTACAATCAATCTTTGGTCGCCAATCAG ATGGGAATTGTGGGGGAGAAACTAGATATAGATTTTGTGATCTCCACAGGTEST: gi|254331558|gb|GR843515.1|GR843515
genomic: GAGATTGGGGAAGAAAAGGAACCTACAATCAATCTTTGGTCGCCAATCAGgtttaatttt ... ctttttttagATGGGAATTGTGGGGGAGAAACTAGATATAGATTTTGTGATCTCCACAGGT
EST: GAGATTGGGGAAGAAAAGGAACCTACAATCAATCTTTGGTCGCCAATCAG ATGGGAATTGTGGGGGAGAAACTAGATATAGATTTTGTGATCTCCACAGGTEST: gi|254331757|gb|GR843607.1|GR843607
genomic: GAGATTGGGGAAGAAAAGGAACCTACAATCAATCTTTGGTCGCCAATCAGgtttaatttt ... ctttttttagATGGGAATTGTGGGGGAGAAACTAGATATAGATTTTGTGATCTCCACAGGT
EST: CTTTGGTCGCCAATCAG ATGGGAATTGTGGGGGAGAAACTAGATATAGATTTTGTGATCTCCACAGGTEST: gi|8670224|gb|BE191331.1|BE191331
genomic: CTTTGGTCGCCAATCAGgtttaatttt ... ctttttttagATGGGAATTGTGGGGGAGAAACTAGATATAGATTTTGTGATCTCCACAGGT
EST: GAGATTGGGGAAGAAAAGGAACCTACAATCAATCTTTGGTCGCCAATCAG ATGGGAATTGTGGGGGAGAAACTAGATATAGATTTTGTGATCTCCACAGGTEST: gi|209697509|gb|BW670010.1|BW670010
genomic: GAGATTGGGGAAGAAAAGGAACCTACAATCAATCTTTGGTCGCCAATCAGgtttaatttt ... ctttttttagATGGGAATTGTGGGGGAGAAACTAGATATAGATTTTGTGATCTCCACAGGT
EST: GAGATTGGGGAAGAAAAGGAACCTACAATCAATCTTTGGTCGCCAATCAG ATGGGAATTGTGGGGGAGAAACTAGATATAGATTTTGTGATCTCCACAGGTEST: gi|9205140|gb|BE331364.1|BE331364
genomic: GAGATTGGGGAAGAAAAGGAACCTACAATCAATCTTTGGTCGCCAATCAGgtttaatttt ... ctttttttagATGGGAATTGTGGGGGAGAAACTAGATATAGATTTTGTGATCTCCACAGGT
EST: GAGATTGGGGAAGAAAAGGAACCTACAATCAATCTTTGGTCGCCAATCAG ATGGGAATTGTGGGGGAGAAACTAGATATAGATTTTGTGATCTCCACAGGT
genomic: GAGATTGGGGAAGAAAAGGAACCTACAATCAATCTTTGGTCGCCAATCAGgtttaatttt ... ctttttttagATGGGAATTGTGGGGGAGAAACTAGATATAGATTTTGTGATCTCCACAGGT
tttacgaagatggaggtgtatccagcgagtaataactcttcattgctttttttagATGGGAATTGTGGGGGAGAAACTAGATATAGATTTTGTGATCTCCACAGGTGACAATTTTTACGAAGATGGACTAAAAGGGGTTGATGATCCAGCATTCT
taataac putative branch site (score: 1)
ctcttcattgcttttt CT-rich tract
ttttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atagtaatctaaaaatatctattttttaggtataaaaacttaatttttacgaagatggaggtgtatccagcgagtaataactcttcattgctttttttagATGGGAATTGTGGGGGAGAAACTAGATATAGATTTTGTGATCTCCACAGGTGACAATTTTTACGAAGATGGACTAAAAGGGGTTGATGATCCAGCATTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - aaaaata
- - - - - - - - - - - - - - - -ataaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaggtg