Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtcccacacccctcttctcttctcccttctcctctccatgaaactaaactaaccctcttcttcttttttttttttttcattttcatcgcaatgcagCAAAACAGCTCTCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAGTCTCGCAGCT

Basic information

species Glycine max
transcript GLYMA08G08970.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298196807|gb|HO041550.1|HO041550
EST:     TTCAACGAAAGAGCCTTCACCGTCGGAATCGGTGGACCCGTCGGTACTGG                         CAAAACAGCTCTCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAG
genomic: TTCAACGAAAGAGCCTTCACCGTCGGAATCGGTGGACCCGTCGGTACTGGgtgggtccca ... cgcaatgcagCAAAACAGCTCTCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAG
EST: gi|193489278|gb|FK454105.1|FK454105
EST:     TTCAACGAAAGAGCCTTCACCGTCGGAATCGGTGGACCCGTCGGTACTGG                         CAAAACAGCTCTCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAG
genomic: TTCAACGAAAGAGCCTTCACCGTCGGAATCGGTGGACCCGTCGGTACTGGgtgggtccca ... cgcaatgcagCAAAACAGCTCTCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAG
EST: gi|208181220|gb|GD976759.1|GD976759
EST:     TTCAACGAAAGAGCCTTCACCGTCGGAATCGGTGGACCCGTCGGTACTGG                         CAAAACAGCTCTCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAG
genomic: TTCAACGAAAGAGCCTTCACCGTCGGAATCGGTGGACCCGTCGGTACTGGgtgggtccca ... cgcaatgcagCAAAACAGCTCTCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAG
EST: gi|193314076|gb|FK282509.1|FK282509
EST:     TTCAACGAAAGAGCCTTCACCGTCGGAATCGGTGGACCCGTCGGTACTGG                         CAAAACAGCTCTCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAG
genomic: TTCAACGAAAGAGCCTTCACCGTCGGAATCGGTGGACCCGTCGGTACTGGgtgggtccca ... cgcaatgcagCAAAACAGCTCTCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAG
EST: gi|193357112|gb|FK319664.1|FK319664
EST:     TTCAACGAAAGAGCCTTCACCGTCGGAATCGGTGGACCCGTCGGTACTGG                         CAAAACAGCTCTCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAG
genomic: TTCAACGAAAGAGCCTTCACCGTCGGAATCGGTGGACCCGTCGGTACTGGgtgggtccca ... cgcaatgcagCAAAACAGCTCTCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAG
EST: gi|208313216|gb|GE117270.1|GE117270
EST:     TTCAACGAAAGAGCCTTCACCGTCGGAATCGGTGGACCCGTCGGTACTGG                         CAAAACAGCTCTCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAG
genomic: TTCAACGAAAGAGCCTTCACCGTCGGAATCGGTGGACCCGTCGGTACTGGgtgggtccca ... cgcaatgcagCAAAACAGCTCTCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAG
EST: gi|207776200|gb|GD747785.1|GD747785
EST:     TTCAACGAAAGAGCCTTCACCGTCGGAATCGGTGGACCCGTCGGTACTGG                         CAAAACAGCTCTCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAG
genomic: TTCAACGAAAGAGCCTTCACCGTCGGAATCGGTGGACCCGTCGGTACTGGgtgggtccca ... cgcaatgcagCAAAACAGCTCTCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAG
EST: gi|193413864|gb|FK379625.1|FK379625
EST:     TTCAACGAAAGAGCCTTCACCGTCGGAATCGGTGGACCCGTCGGTACTGG                         CAAAACAGCTCTCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAG
genomic: TTCAACGAAAGAGCCTTCACCGTCGGAATCGGTGGACCCGTCGGTACTGGgtgggtccca ... cgcaatgcagCAAAACAGCTCTCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAG
EST: gi|193547457|gb|FK501954.1|FK501954
EST:     TTCAACGAAAGAGCCTTCACCGTCGGAATCGGTGGACCCGTCGGTACTGG                         CAAAACAGCTCTCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAG
genomic: TTCAACGAAAGAGCCTTCACCGTCGGAATCGGTGGACCCGTCGGTACTGGgtgggtccca ... cgcaatgcagCAAAACAGCTCTCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAG
EST: gi|208118819|gb|GD918726.1|GD918726
EST:     TTCAACGAAAGAGCCTTCACCGTCGGAATCGGTGGACCCGTCGGTACTGG                         CAAAACAGCTCTCATGTTGGCCCTTTGTGAAACTCTTGCGCGAAAA
genomic: TTCAACGAAAGAGCCTTCACCGTCGGAATCGGTGGACCCGTCGGTACTGGgtgggtccca ... cgcaatgcagCAAAACAGCTCTCATGTTGGCCCTTTGTGAA-CTCTTGCGCGAAAA
EST: gi|193499662|gb|FK458405.1|FK458405
EST:     TTCAACGAAAGAGCCTTCACCGTCGGAATCGGTGGACCCGTCGGTACTGG                         CAAAACAGCTCTCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAG
genomic: TTCAACGAAAGAGCCTTCACCGTCGGAATCGGTGGACCCGTCGGTACTGGgtgggtccca ... cgcaatgcagCAAAACAGCTCTCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAG
EST: gi|207787552|gb|GD759348.1|GD759348
EST:     CCGTCGGAATCGGTGGACCCGTCGGTACTGG                         CAAAACAGCTCTCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAG
genomic: CCGTCGGAATCGGTGGACCCGTCGGTACTGGgtgggtccca ... cgcaatgcagCAAAACAGCTCTCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAG
EST: gi|208208241|gb|GE004228.1|GE004228
EST:     TTCAACGAAAGAGCCTTCACCGTCGGAATCGGTGGACCCGTCGGTACTGG                         CAAAACAGCTCTCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAG
genomic: TTCAACGAAAGAGCCTTCACCGTCGGAATCGGTGGACCCGTCGGTACTGGgtgggtccca ... cgcaatgcagCAAAACAGCTCTCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAG
EST: gi|207780749|gb|GD754266.1|GD754266
EST:     TTCAACGAAAGAGCCTTCACCGTCGGAATCGGTGGACCCGTCGGTACTGG                         CAAAACAGCTCTCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAG
genomic: TTCAACGAAAGAGCCTTCACCGTCGGAATCGGTGGACCCGTCGGTACTGGgtgggtccca ... cgcaatgcagCAAAACAGCTCTCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAG
EST: gi|208302626|gb|GE097871.1|GE097871
EST:     TTCAACGAAAGAGCCTTCACCGTCGGAATCGGTGGACCCGTCGGTACTGG                         A
genomic: TTCAACGAAAGAGCCTTCACCGTCGGAATCGGTGGACCCGTCGGTACTGGgtgggtccca ... cgcaatgcag-
EST: gi|208302626|gb|GE097871.1|GE097871
EST:     TTCAACGAAAGAGCCTTCACCGTCGGAATCGGTGGACCCGTCGGTACTGG                         A
genomic: TTCAACGAAAGAGCCTTCACCGTCGGAATCGGTGGACCCGTCGGTACTGGgtgggtccca ... cgcaatgcag-
EST: gi|208213331|gb|GE012754.1|GE012754
EST:     TTCAACGAAAGAGCCTTCACCGTCGGAATCGGTGGACCCGTCGGTACTGG                         CAAAACAGCTCTCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAG
genomic: TTCAACGAAAGAGCCTTCACCGTCGGAATCGGTGGACCCGTCGGTACTGGgtgggtccca ... cgcaatgcagCAAAACAGCTCTCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAG
EST: gi|208028146|gb|GD824136.1|GD824136
EST:     TTCAACGAAAGAGCCTTCACCGTCGGAATCGGTGGACCCGTCGGTACTGG                         CAAAACAGCTCTCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAG
genomic: TTCAACGAAAGAGCCTTCACCGTCGGAATCGGTGGACCCGTCGGTACTGGgtgggtccca ... cgcaatgcagCAAAACAGCTCTCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAG
EST: gi|193334416|gb|FK300908.1|FK300908
EST:     TTCAACGAAAGAGCCTTCACCGTCGGAATCGGTGGACCCGTCGGTACTGG                         CAAAACAGCTCTCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAG
genomic: TTCAACGAAAGAGCCTTCACCGTCGGAATCGGTGGACCCGTCGGTACTGGgtgggtccca ... cgcaatgcagCAAAACAGCTCTCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAG
EST: gi|193721187|gb|FK660345.1|FK660345
EST:     TTCAACGAAAGAGCCTTCACCGTCGGAATCGGTGGACCCGTCGGTACTGG                         CAAAACAGCTCTCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAG
genomic: TTCAACGAAAGAGCCTTCACCGTCGGAATCGGTGGACCCGTCGGTACTGGgtgggtccca ... cgcaatgcagCAAAACAGCTCTCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAG
EST: gi|193666625|gb|FK607658.1|FK607658
EST:     TTCAACGAAAGAGCCTTCACCGTCGGAATCGGTGGACCCGTCGGTACTGG                         CAAAACAGCTCTCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAG
genomic: TTCAACGAAAGAGCCTTCACCGTCGGAATCGGTGGACCCGTCGGTACTGGgtgggtccca ... cgcaatgcagCAAAACAGCTCTCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAG
EST: gi|9259040|gb|BE347187.1|BE347187
EST:     TTCAACGAAAGAGCCTTCACCGTCGGAATCGGTGGACCCGTCGGTACTGG                         CAAAACAGCTCTCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAG
genomic: TTCAACGAAAGAGCCTTCACCGTCGGAATCGGTGGACCCGTCGGTACTGGgtgggtccca ... cgcaatgcagCAAAACAGCTCTCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aactaaactaaccctcttcttcttttttttttttttcattttcatcgcaatgcagCAAAACAGCTCTCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAGTCTCGCAGCT
     aactaac  putative branch site (score: 1)
       ctaaccctcttcttct  CT-rich tract
                ttcttctttttttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgggtcccacacccctcttctcttctcccttctcctctccatgaaactaaactaaccctcttcttcttttttttttttttcattttcatcgcaatgcagCAAAACAGCTCTCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAGTCTCGCAGCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT