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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taagatgaaagatcgcaaggtcttagcttccttctttttgggtacatataatgcagctgttgttattttgtttagttataatgtttctgtttacttgcagGTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCTAATGCAGTTCATGAATTAACAATAGCAA

Basic information

species Glycine max
transcript GLYMA08G08690.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192301273|gb|FG990193.1|FG990193
EST:     TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAG                         GTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
genomic: TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAGgtatttccca ... ttacttgcagGTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
EST: gi|8284019|gb|BE021578.1|BE021578
EST:     CCAATCTCCTTTCTCAGCTAAAG                         GTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
genomic: CCAATCTCCTTTCTCAGCTAAAGgtatttccca ... ttacttgcagGTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
EST: gi|213615022|gb|DB957060.1|DB957060
EST:     TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAG                         GTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
genomic: TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAGgtatttccca ... ttacttgcagGTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
EST: gi|298194068|gb|HO040716.1|HO040716
EST:     TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAG                         GTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
genomic: TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAGgtatttccca ... ttacttgcagGTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
EST: gi|12689998|gb|BG156334.1|BG156334
EST:     TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAG                         GTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
genomic: TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAGgtatttccca ... ttacttgcagGTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
EST: gi|38193646|gb|CF922852.1|CF922852
EST:     TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAG                         GTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
genomic: TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAGgtatttccca ... ttacttgcagGTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
EST: gi|298170815|gb|HO015791.1|HO015791
EST:     TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCTTTTCTCAGCTAAAG                         GTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCGGATACACCT
genomic: TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAGgtatttccca ... ttacttgcagGTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
EST: gi|15663156|gb|BI700527.1|BI700527
EST:     TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAG                         GTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
genomic: TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAGgtatttccca ... ttacttgcagGTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
EST: gi|192303507|gb|FG998601.1|FG998601
EST:     TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAG                         GTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
genomic: TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAGgtatttccca ... ttacttgcagGTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
EST: gi|192326943|gb|FK019220.1|FK019220
EST:     TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAG                         GTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
genomic: TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAGgtatttccca ... ttacttgcagGTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
EST: gi|7692387|gb|AW760495.1|AW760495
EST:     TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAG                         GTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
genomic: TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAGgtatttccca ... ttacttgcagGTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
EST: gi|15814178|gb|BI786453.1|BI786453
EST:     TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAG                         GTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
genomic: TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAGgtatttccca ... ttacttgcagGTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
EST: gi|213601171|gb|DB964664.1|DB964664
EST:     TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAG                         GTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
genomic: TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAGgtatttccca ... ttacttgcagGTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
EST: gi|192299340|gb|FG988711.1|FG988711
EST:     TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAG                         GTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
genomic: TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAGgtatttccca ... ttacttgcagGTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
EST: gi|192317899|gb|FK009435.1|FK009435
EST:     TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAG                         GTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
genomic: TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAGgtatttccca ... ttacttgcagGTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
EST: gi|213601151|gb|DB964658.1|DB964658
EST:     TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAG                         GTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
genomic: TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAGgtatttccca ... ttacttgcagGTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
EST: gi|298180573|gb|HO025660.1|HO025660
EST:     TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAG                         GTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
genomic: TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAGgtatttccca ... ttacttgcagGTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
EST: gi|13125434|gb|BG316004.1|BG316004
EST:     TTCTCCGGAACGACTTC-ATAACTGTTCCAATCTCCTTTCTCAGCTAAAG                         GTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
genomic: TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAGgtatttccca ... ttacttgcagGTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
EST: gi|17401304|gb|BM178086.1|BM178086
EST:     TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAG                         GTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
genomic: TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAGgtatttccca ... ttacttgcagGTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
EST: gi|208177644|gb|GD977345.1|GD977345
EST:     TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAG                         GTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
genomic: TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAGgtatttccca ... ttacttgcagGTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
EST: gi|192326357|gb|FK015889.1|FK015889
EST:     TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAG                         GTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACTT
genomic: TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAGgtatttccca ... ttacttgcagGTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
EST: gi|7588314|gb|AW704112.1|AW704112
EST:     TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAG                         GTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
genomic: TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAGgtatttccca ... ttacttgcagGTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
EST: gi|24205598|gb|BU964851.1|BU964851
EST:     TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAG                         GTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
genomic: TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAGgtatttccca ... ttacttgcagGTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
EST: gi|6566729|gb|AW234361.1|AW234361
EST:     TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAG                         GTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
genomic: TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAGgtatttccca ... ttacttgcagGTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
EST: gi|192294009|gb|FG987178.1|FG987178
EST:     TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAG                         GTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
genomic: TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAGgtatttccca ... ttacttgcagGTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atataatgcagctgttgttattttgtttagttataatgtttctgtttacttgcagGTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCTAATGCAGTTCATGAATTAACAATAGCAA
                                      tttctgttt  CT-rich tract
              ttgttattttgtttag  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
taagatgaaagatcgcaaggtcttagcttccttctttttgggtacatataatgcagctgttgttattttgtttagttataatgtttctgtttacttgcagGTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCTAATGCAGTTCATGAATTAACAATAGCAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGAT
- - - - - - - - - - - - -gcttcct
- - - - - - - - - - - - - - - - - - - - - - - - - -tgcagct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtttctg