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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttcgtgcttctttattctctactttcttcatcgttactatactcattattatcctcttgattctttatgtacttttgtagATACACATTGAGATTCGACAAAGCTGAATTGGATAACATCGTTGAACTTGTCTCCGACCTTCCTGATCCACAA

Basic information

species Glycine max
transcript GLYMA08G08630.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213599125|gb|DB958372.1|DB958372
EST:     AACCCTATCGTTGACCACGTTCGCGAAAGAGGCGATGCTGCTGTCAAAGA                         ATACACATTGAGATTCGACAAAGCTGAATTGGATAACATCGTTGAACTTGT
genomic: AACCCTATCGTTGACCACGTTCGCGAAAGAGGCGATGCTGCTGTCAAAGAgtgagttcgt ... acttttgtagATACACATTGAGATTCGACAAAGCTGAATTGGATAACATCGTTGAACTTGT
EST: gi|209698125|gb|BW661068.1|BW661068
EST:     AACCCTATCGTTGACCACATTCGCGAAAGAGGCGATGCTGCTGTCAAAGA                         ATACACATTGAGATTCGACAAAGCTGAATTGGATAACATCGTTGAACTTGT
genomic: AACCCTATCGTTGACCACGTTCGCGAAAGAGGCGATGCTGCTGTCAAAGAgtgagttcgt ... acttttgtagATACACATTGAGATTCGACAAAGCTGAATTGGATAACATCGTTGAACTTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttcatcgttactatactcattattatcctcttgattctttatgtacttttgtagATACACATTGAGATTCGACAAAGCTGAATTGGATAACATCGTTGAACTTGTCTCCGACCTTCCTGATCCACAA
                             tcttgat  putative branch site (score: 4)
                                            tactttt  putative PPT
            tatactcattattat  TA-rich tract