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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgctccactttttgatgttcttttgtttacttttcagttttcttttttaattctggtcttttattcttattgctgttatgcagATGGTACAAAATCAAGGTTACCATGAGATGGGAGGATGGTGAAGGCTCCTATCCCGGGATTCCGGCGCGGGTTGTTCAGTATGAAG

Basic information

species Glycine max
transcript GLYMA08G08190.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G08190.1 (Glycine max), 3'ss of exon 1
lower sequence: AT1G58350.3 (Arabidopsis thaliana), 3'ss of exon 2
gtatgctccactttttgatgttcttttgt--ttacttttcagttttcttttttaattctggtcttttattcttattgctgttatgcagATGGTACAAAATCAAGGTTACCATGAGATGGGAGGATGGTGAAGGCTCCTATCCCGGGATTCCGGCGCGGGTTGTTCAGTATGAAG
|||||   ||  |||| || |   | | |  |||   ||||   || ||||  ||     |  | | | |||| |  || | || |||||||||  |||||||  | |||||||||||||||||||||||   |     ||  || |||||  | || || || || |||||||
gtatggaacatatttttatatatatatatctttatacttcaacattgttttgaaa-----gcttctgactcttttaact-tcat-cagATGGTATCAAATCAAAATCACCATGAGATGGGAGGATGGTGATAACGTAACTCGTGGTATTCCTTCACGAGTCGTGCAATATGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209722154|gb|BW651221.1|BW651221
EST:     GTTGCAATTTACATTCATAGGTTCCATAATCTTGACCTTTTTGAACAAGG                         ATGGTACAAAATCAAGGTTACCATGAGATGGGAGGATGGTGAAGGCTCCTA
genomic: GTTGCAATTTACATTCATAGGTTCCATAATCTTGACCTTTTTGAACAAGGgtatgctcca ... tgttatgcagATGGTACAAAATCAAGGTTACCATGAGATGGGAGGATGGTGAAGGCTCCTA
EST: gi|193604836|gb|FK559524.1|FK559524
EST:     GTTGCAATTTACATTCATAGGTTCCATAATCTTGACCTTTTTGAACAAGG                         ATGGTACAAAATCAAGGTTACCATGAGATGGGAGGATGGTGAAGGCTCCTA
genomic: GTTGCAATTTACATTCATAGGTTCCATAATCTTGACCTTTTTGAACAAGGgtatgctcca ... tgttatgcagATGGTACAAAATCAAGGTTACCATGAGATGGGAGGATGGTGAAGGCTCCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttttcagttttcttttttaattctggtcttttattcttattgctgttatgcagATGGTACAAAATCAAGGTTACCATGAGATGGGAGGATGGTGAAGGCTCCTATCCCGGGATTCCGGCGCGGGTTGTTCAGTATGAAG
                ttttaat  putative branch site (score: 3)
       agttttcttttttaat  TA-rich tract