1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgagttttatgttcatagtttattttgtttgcacttagatttttctatttgttgataattcccttgtgtgttctgtctgtcattcttgtgctgcaaatagCAAAATGGTAGGAAGTGTTGATGTTCTAGCTCATGATTCCAGCATTAATGGAACAATGAAACAGTGGCCTGAAGATTTCAGTTCCATGACGATTATGAGA
species | Glycine max |
transcript | GLYMA08G08130.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTCTGAGATAAAAATATCAGCTTTTGTAGTTCACACTCTAGTTGCTTCTG CAAAATGGTAGGAAGTGTTGATGTTCTAGCTCATGATTCCAGCATTAATGGEST: gi|192294896|gb|FG987585.1|FG987585
genomic: TTCTGAGATAAAAATATCAGCTTTTGTAGTTCACACTCTAGTTGCTTCTGgtgtgcttcc ... ctgcaaatagCAAAATGGTAGGAAGTGTTGATGTTCTAGCTCATGATTCCAGCATTAATGG
EST: TTCTGAGAT-AAAATATCAGCTTTTGTAGTTCACACTCTAGTTGCTTCTG CAAAATGGTAGGAAGTGTTGATGTTCTAGCTCATGATTCCAGCATTAATGG
genomic: TTCTGAGATAAAAATATCAGCTTTTGTAGTTCACACTCTAGTTGCTTCTGgtgtgcttcc ... ctgcaaatagCAAAATGGTAGGAAGTGTTGATGTTCTAGCTCATGATTCCAGCATTAATGG
tatttgttgataattcccttgtgtgttctgtctgtcattcttgtgctgcaaatagCAAAATGGTAGGAAGTGTTGATGTTCTAGCTCATGATTCCAGCATTAATGGAACAATGAAACAGTGGCCTGAAGATTTCAGTTCCATGACGATTATGAGA
tgttgat putative branch site (score: 4)
ttgataatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgagttttatgttcatagtttattttgtttgcacttagatttttctatttgttgataattcccttgtgtgttctgtctgtcattcttgtgctgcaaatagCAAAATGGTAGGAAGTGTTGATGTTCTAGCTCATGATTCCAGCATTAATGGAACAATGAAACAGTGGCCTGAAGATTTCAGTTCCATGACGATTATGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - -tgcactt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttctgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcttgtg