1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...taccttgctttgactactgcctttcccattaaacttcaataatattatctgttacctttttttttttgctcagcatattatctgttacctttgattgcagGTTTATACCTCTATACAGTTACGGAGAGTAAGCTTTTGGTGGATACTTCAAGGGGAGATACCTTGCACATCAAT
species | Glycine max |
transcript | GLYMA08G07840.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CACCGTCGTTTCCGCCGCTGTCATGCTGTTTCTCTTCTTCTCCGAGCTAA GTTTATACCTCTATACAGTTACGGAGAGTAAGCTTTTGGTGGATACTTCAAEST: gi|209704674|gb|BW675882.1|BW675882
genomic: CACCGTCGTTTCCGCCGCTGTCATGCTGTTTCTCTTCTTCTCCGAGCTAAgtatggcccc ... ttgattgcagGTTTATACCTCTATACAGTTACGGAGAGTAAGCTTTTGGTGGATACTTCAA
EST: CACCGTCGTTTCCGCCGCTGTCATGCTGTTTCTCTTCTTCTCCGAGCTAA GTTTATACCTCTATACAGTTACGGAGAGTAAGCTTTTGGTGGATACTTCAAEST: gi|298191603|gb|HO039082.1|HO039082
genomic: CACCGTCGTTTCCGCCGCTGTCATGCTGTTTCTCTTCTTCTCCGAGCTAAgtatggcccc ... ttgattgcagGTTTATACCTCTATACAGTTACGGAGAGTAAGCTTTTGGTGGATACTTCAA
EST: CACCGTCGTTTCCGCCGCTGTCATGCTGTTTCTCTTCTTCTCCGAGCTAA GTTTATACCTCTATACAGTTACGGAGAGTAAGCTTTTGGTGGATACTTCAAEST: gi|192326043|gb|FK016915.1|FK016915
genomic: CACCGTCGTTTCCGCCGCTGTCATGCTGTTTCTCTTCTTCTCCGAGCTAAgtatggcccc ... ttgattgcagGTTTATACCTCTATACAGTTACGGAGAGTAAGCTTTTGGTGGATACTTCAA
EST: CACCGTCGTTTCCGCCGCTGTCATGCTGTTTCTCTTCTTCTCCGAGCTAA GTTTATGCCTCTATACAGTTACGGAGAGTAAGCTTTTGGTGGATACTTCAAEST: gi|193632629|gb|FK580533.1|FK580533
genomic: CACCGTCGTTTCCGCCGCTGTCATGCTGTTTCTCTTCTTCTCCGAGCTAAgtatggcccc ... ttgattgcagGTTTATACCTCTATACAGTTACGGAGAGTAAGCTTTTGGTGGATACTTCAA
EST: TCTCTTCTTCTCCGTAGCTAA GTTTATACCTCTATACAGTTACGGAGAGTAAGCTTTTGGTGGATACTTCAEST: gi|207740114|gb|GD714724.1|GD714724
genomic: TCTCTTCTTCTCCG-AGCTAAgtatggcccc ... ttgattgcagGTTTATACCTCTATACAGTTACGGAGAGTAAGCTTTTGGTGGATACTTCA
EST: CACCGTCGTTTCCGCCGCTGTCATGCTGTTTCTCTTCTTCTCCGAGCTAA GTTTATACCTCTATACAGTTACGGAGAGTAAGCTTTTGGTGGATACTTCAA
genomic: CACCGTCGTTTCCGCCGCTGTCATGCTGTTTCTCTTCTTCTCCGAGCTAAgtatggcccc ... ttgattgcagGTTTATACCTCTATACAGTTACGGAGAGTAAGCTTTTGGTGGATACTTCAA
tatctgttacctttttttttttgctcagcatattatctgttacctttgattgcagGTTTATACCTCTATACAGTTACGGAGAGTAAGCTTTTGGTGGATACTTCAAGGGGAGATACCTTGCACATCAAT
ctttgat putative branch site (score: 5)
ttaccttt CT-rich tract
ttaccttttttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taccttgctttgactactgcctttcccattaaacttcaataatattatctgttacctttttttttttgctcagcatattatctgttacctttgattgcagGTTTATACCTCTATACAGTTACGGAGAGTAAGCTTTTGGTGGATACTTCAAGGGGAGATACCTTGCACATCAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- ccttgct
- - - - - - -ctactgc
- - - - - - - - - - ctttccc
- - - - - - - - - - - - - - - - - - - - - - - - -tgttacc