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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gaatttagtgaggaacttggtagaatgtgtgcttatgggtgtttgtttccaagccagattttgtcaaaggaatcaataatcataacttgtttattctcagGTGCAACTGGTACGAATTCAAAGGAGGGTACCTGAGTATGGGTGGACAACGCAGAAGGTTTTCCATTTGATGAATTTTGTTGTCAATGGATGTAA

Basic information

species Glycine max
transcript GLYMA08G07670.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G07670.2 (Glycine max), 3'ss of exon 1
lower sequence: Vv12s0028g00460.t01 (Vitis vinifera), 3'ss of exon 1
gaatttagtgaggaacttggtagaatgtgtgcttatgggtgtttgtttccaagccagattttgtcaaaggaatcaataatcataacttgttta-ttctcagGTGCAACTGGTACGAATTCAAAGGAGGGTACCTGAGTATGGGTGGACAACGCAGAAGGTTTTCCATTTGATGAATTTTGTTGTCAATGGATGTAA
   | || | |      | |   | |  | |        | ||  || |     |   |||  | ||     | ||  |||  |   ||  || || | |||| |||||  | || ||||||   || ||||| || ||||| |||||||| || ||||| ||||| |||||||||||| |||| |||||||    
-gttgtactcatccttcttgagaattaagagtgagaaattattcattccttcaacttgtttcctaaatttcctaaaagatctcattatgcctaatttttagGTACAACTCTTTCGGATTCAATTCAGAGTACCAGAATATGGTTGGACAACACAAAAGGTCTTCCACTTGATGAATTTTATTGTAAATGGAT----

upper sequence: GLYMA08G07670.2 (Glycine max), 3'ss of exon 1
lower sequence: EFJ23006 (Selaginella moellendorffii), 3'ss of exon 1
gaatttagtgaggaacttggtagaatgtgtgcttatgggtgtttgtttccaagccagattttgtcaaaggaatc---aataatcataacttgtttattctcagGTGCAACTGGTACGAATTCAAAGGAGGGTACCTGAGTATGGGTGGACAACGCAGAAGGTTTTCCATTTGATGAATTTTGTTGTCAATGGATGTAA
                                 |||||   |  |  |      | | | || || |  || ||      |||| |  |   ||   || ||| | |||||  | || ||  | |   | || || |||||||| ||||| ||||||||||| ||||||||| |||||||  |||| ||||||     
--------------------------------gtatgga-atccgactagttttctggtcttttctattgattcttggggaatcgtggcgatttctctcgcagATACAACTCATCCGGATCGAGATTCGCGTCCCCGAGTATGGCTGGACCACGCAGAAGGTCTTCCATTTGCTGAATTTCCTTGTAAATGGAG----

upper sequence: GLYMA08G07670.2 (Glycine max), 3'ss of exon 1
lower sequence: EFJ30530 (Selaginella moellendorffii), 3'ss of exon 1
gaatttagtgaggaacttggtagaatgtgtgcttatgggtgtttgtttccaagccagattttgtcaaaggaatc---aataatcataacttgtttattctcagGTGCAACTGGTACGAATTCAAAGGAGGGTACCTGAGTATGGGTGGACAACGCAGAAGGTTTTCCATTTGATGAATTTTGTTGTCAATGGATGTAA
                                 |||||      | |     |   | | || || |  || ||      |||| |  |   ||   || ||| | |||||  | || ||  | |   | || || |||||||| ||||| ||||||||||| ||||||||| |||||||  |||| ||||||     
--------------------------------gtatggaatccggctagtttgttgg-tcttttctattgattctcggggaatcgtggcgatttctctcgcagATACAACTCATCCGGATCGAGATTCGCGTCCCCGAGTATGGCTGGACGACGCAGAAGGTCTTCCATTTGCTGAATTTCCTTGTAAATGGAG----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151393599|gb|EV263474.1|EV263474
EST:     CTTACTATGCCCTTTGTGCCGCTTATACGTTGGTCTCCTTTGTTGCCCTG                         GTGCAACTGGTACGAATTCAAAGGAGGGTACCTGAGTATGGGTGGACAACG
genomic: CTTACTATGCCCTTTGTGCCGCTTATACGTTGGTCTCCTTTGTTGCCCTGgttggtattc ... ttattctcagGTGCAACTGGTACGAATTCAAAGGAGGGTACCTGAGTATGGGTGGACAACG
EST: gi|163926925|gb|EH038506.1|EH038506
EST:     CCTACTATGCCCTTTGTGCCGCTTATACGTTGGTCTCCTTTGTTGCCCTG                         GTGCAACTGGTACGAATTCAAAGGAGGGTACCTGAGTATGGGTGGACAACG
genomic: CTTACTATGCCCTTTGTGCCGCTTATACGTTGGTCTCCTTTGTTGCCCTGgttggtattc ... ttattctcagGTGCAACTGGTACGAATTCAAAGGAGGGTACCTGAGTATGGGTGGACAACG
EST: gi|192307419|gb|FK000761.1|FK000761
EST:     CTTACTATGCCCTTTGTGCCGCTTATACGTTGGTCTCCTTTGTTGCCCTG                         GTGCAACTGGTACGAATTCAAAGGAGGGTACCTGAGTATGGGTGGACAACG
genomic: CTTACTATGCCCTTTGTGCCGCTTATACGTTGGTCTCCTTTGTTGCCCTGgttggtattc ... ttattctcagGTGCAACTGGTACGAATTCAAAGGAGGGTACCTGAGTATGGGTGGACAACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttccaagccagattttgtcaaaggaatcaataatcataacttgtttattctcagGTGCAACTGGTACGAATTCAAAGGAGGGTACCTGAGTATGGGTGGACAACGCAGAAGGTTTTCCATTTGATGAATTTTGTTGTCAATGGATGTAA
                                  tcataac  putative branch site (score: 2)
                                            tttattctc  putative PPT
                             aataatcataacttgt  TA-rich tract