1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aacaacttgcgcacctgcttgattaactgagccagactcctttagtagtctggatcacacatgtgatacttaacaaattagtttggaatgttttgtgaagGATATTTTTGAATCTATGGGAGACTATGTAGATGGGTTAAAGTTTTCTGGAGGTTCTCACAGCATGATGCCAAAGGCTACTATCAAGCAAATCATTGACA
species | Glycine max |
transcript | GLYMA08G06660.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCGAGATTCAAAGCCCCCACTGCACTCTCTTCTCCCACAACCTTCTTCAG GATATTTTTGAATCTATGGGAGACTATGTAGATGGGTTAAAGTTTTCTGGAEST: gi|151394464|gb|EV264335.1|EV264335
genomic: CCGAGATTCAAAGCCCCCACTGCACTCTCTTCTCCCACAACCTTCTTCAGgttttctctt ... ttttgtgaagGATATTTTTGAATCTATGGGAGACTATGTAGATGGGTTAAAGTTTTCTGGA
EST: CCGAGATTCAAAGCCCCCACTGCACTCTCTTCTCCCACAACCTTCTTCAG GATATTTTTGAATCTATGGGAGACTATGTAGATGGGTTAAAGTTTTCTGGAEST: gi|151401140|gb|EV270954.1|EV270954
genomic: CCGAGATTCAAAGCCCCCACTGCACTCTCTTCTCCCACAACCTTCTTCAGgttttctctt ... ttttgtgaagGATATTTTTGAATCTATGGGAGACTATGTAGATGGGTTAAAGTTTTCTGGA
EST: CCGAGATTCAAAGCCCCCACTGCACTCTCTTCTCCCACAACCTTCTTCAG GATATTTTTGAATCTATGGGAGACTATGTAGATGGGTTAAAGTTTTCTGGAEST: gi|298166286|gb|HO009257.1|HO009257
genomic: CCGAGATTCAAAGCCCCCACTGCACTCTCTTCTCCCACAACCTTCTTCAGgttttctctt ... ttttgtgaagGATATTTTTGAATCTATGGGAGACTATGTAGATGGGTTAAAGTTTTCTGGA
EST: CCGAGATTCAAAGCCCCCACTGCACTCTCTTCTCCCACAACCTTCTTCAG GATATTTTTGAATCTATGGGAGACTATGTAGATGGGTTAAAGTTTTCTGGAEST: gi|9258852|gb|BE346999.1|BE346999
genomic: CCGAGATTCAAAGCCCCCACTGCACTCTCTTCTCCCACAACCTTCTTCAGgttttctctt ... ttttgtgaagGATATTTTTGAATCTATGGGAGACTATGTAGATGGGTTAAAGTTTTCTGGA
EST: CCGAGATTCAAAGCCCCCACTGCACTCTCTTCTCCCACAACCTTCTTCAG GATATTTTTGAATCTATGGGAGACTATGTAGATGGGTTAAAGTTTTCTGGAEST: gi|213613975|gb|DB960954.1|DB960954
genomic: CCGAGATTCAAAGCCCCCACTGCACTCTCTTCTCCCACAACCTTCTTCAGgttttctctt ... ttttgtgaagGATATTTTTGAATCTATGGGAGACTATGTAGATGGGTTAAAGTTTTCTGGA
EST: CCGAGATTCAAAGCCCCCACTGCACTCTCTTCTCCCACAACCTTCTTCAG GATATTTTTGAATCTATGGGAGACTATGTAGATGGGTTAAAGTTTTCTGGAEST: gi|298163532|gb|HO012265.1|HO012265
genomic: CCGAGATTCAAAGCCCCCACTGCACTCTCTTCTCCCACAACCTTCTTCAGgttttctctt ... ttttgtgaagGATATTTTTGAATCTATGGGAGACTATGTAGATGGGTTAAAGTTTTCTGGA
EST: CCGAGATTCAAAGCCCCCACTGCACTCTCTTCTCCCACAACCTTCTTCAG GATATTTTTGAATCTATGGGAGACTATGTAGATGGGTTAAAGTTTTCTGGAEST: gi|151394843|gb|EV264714.1|EV264714
genomic: CCGAGATTCAAAGCCCCCACTGCACTCTCTTCTCCCACAACCTTCTTCAGgttttctctt ... ttttgtgaagGATATTTTTGAATCTATGGGAGACTATGTAGATGGGTTAAAGTTTTCTGGA
EST: CCGAGATTCAAAGCCCCCACTGCACTCTCTTCTCCCACAACCTTCTTCAG GATATTTTTGAATCTATGGGAGACTATGTAGATGGGTTAAAGTTTTCTGGA
genomic: CCGAGATTCAAAGCCCCCACTGCACTCTCTTCTCCCACAACCTTCTTCAGgttttctctt ... ttttgtgaagGATATTTTTGAATCTATGGGAGACTATGTAGATGGGTTAAAGTTTTCTGGA
tagtctggatcacacatgtgatacttaacaaattagtttggaatgttttgtgaagGATATTTTTGAATCTATGGGAGACTATGTAGATGGGTTAAAGTTTTCTGGAGGTTCTCACAGCATGATGCCAAAGGCTACTATCAAGCAAATCATTGACA
acttaac putative branch site (score: 3)
atacttaacaaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacaacttgcgcacctgcttgattaactgagccagactcctttagtagtctggatcacacatgtgatacttaacaaattagtttggaatgttttgtgaagGATATTTTTGAATCTATGGGAGACTATGTAGATGGGTTAAAGTTTTCTGGAGGTTCTCACAGCATGATGCCAAAGGCTACTATCAAGCAAATCATTGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- -aacttgc
- - - - - -cacctgc
- - - - - - - - - - - - - - - - - - - - - - - -gtctgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - -cacacat