1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tattagtagcttagtggctgaagctgggaaactgccaatagtgctgtttatttgctcatgttttaaatctttttctgtgatcttgtgacaccttttccagAGATATACAAAAGGCTACTTCTAATTTCACAACCATCATAGGCAATGGAGCATTTGGTCCTGTTTATAAAGCGCAGATGGATACAGGTGAGACAGTTGCT
species | Glycine max |
transcript | GLYMA08G06620.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGGAGGAATAGTTCAGTGTCAGCATGTGGAATTCCCAAGTATTTTTACAA AGATATACAAAAGGCTACTTCTAATTTCACAACCATCATAGGCAATGGAGCEST: gi|207781405|gb|GD752766.1|GD752766
genomic: AGGAGGAATAGTTCAGTGTCAGCATGTGGAATTCCCAAGTATTTTTACAAgtatgttaac ... ccttttccagAGATATACAAAAGGCTACTTCTAATTTCACAACCATCATAGGCAATGGAGC
EST: AGGAGGAATAGTTCAGTGTCAGCATGTGGAATTCCCAAGTATTTTTACAA AGATATACAAAAGGCTACTTCTAATTTCACAACCATCATAGGCAATGGAGCEST: gi|208234237|gb|GE034470.1|GE034470
genomic: AGGAGGAATAGTTCAGTGTCAGCATGTGGAATTCCCAAGTATTTTTACAAgtatgttaac ... ccttttccagAGATATACAAAAGGCTACTTCTAATTTCACAACCATCATAGGCAATGGAGC
EST: AGGAGGAATAGTTCAGTGTCAGCATGTGGAATTCCCAAGTATTTTTACAA AGATATACAAAAGGCTACTTCTAATTTCACAACCATCATAGGCAATGGAGCEST: gi|208303063|gb|GE100996.1|GE100996
genomic: AGGAGGAATAGTTCAGTGTCAGCATGTGGAATTCCCAAGTATTTTTACAAgtatgttaac ... ccttttccagAGATATACAAAAGGCTACTTCTAATTTCACAACCATCATAGGCAATGGAGC
EST: AGGAGGAATAGTTCAGTGTCAGCATGTGGAATTCCCAAGTATTTTTACAA AGATATACAAAAGGCTACTTCTAATTTCACAACCATCATAGGCAATGGAGC
genomic: AGGAGGAATAGTTCAGTGTCAGCATGTGGAATTCCCAAGTATTTTTACAAgtatgttaac ... ccttttccagAGATATACAAAAGGCTACTTCTAATTTCACAACCATCATAGGCAATGGAGC
gtttatttgctcatgttttaaatctttttctgtgatcttgtgacaccttttccagAGATATACAAAAGGCTACTTCTAATTTCACAACCATCATAGGCAATGGAGCATTTGGTCCTGTTTATAAAGCGCAGATGGATACAGGTGAGACAGTTGCT
caccttttcc CT-rich tract
atgttttaaatctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattagtagcttagtggctgaagctgggaaactgccaatagtgctgtttatttgctcatgttttaaatctttttctgtgatcttgtgacaccttttccagAGATATACAAAAGGCTACTTCTAATTTCACAACCATCATAGGCAATGGAGCATTTGGTCCTGTTTATAAAGCGCAGATGGATACAGGTGAGACAGTTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - tggctga
- - - - - - - - - - - - - - - -ctgccaa
- - - - - - - - - - - - - - - - - - - - -tgctgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcttgtg