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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataccccaaatactttaagatagtcctttttgtatgtgttgtgtttcttttattgtatgtcatttatatttgaactagtattttaaatttttgcagGGGTGGAGGGAACTTTGCCCCTAGATCCTTGGTATATTGTTGGTCCTGTCGTTAAGGGATTTGGTCGTGACTCGAAGGTACTTGGGATCCCTACAG

Basic information

species Glycine max
transcript GLYMA08G06330.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G06330.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv00s0181g00140.t01 (Vitis vinifera), 3'ss of exon 7
gtatacccc--aaatactt--taagatagtcctttttgtatg-tgttgtgtttcttttattgtatgtcatttatatttgaactagtattttaaatttttgcagGGGTGGAGGGAACTTTGCCCCTAGATCCTTGGTATATTGTTGGTCCTGTCGTTAAGGGATTTGGTCGTGACTCGAAGGTACTTGGGATCCCTACAG
||| ||| |  | ||||||  ||  ||| ||       | |  |  |  | |||| ||  | |   | ||||  || ||||||| |  |||  |    ||||||||| ||||  || || ||  |||| ||||||||||| | ||| |||||| ||||||||||||||||||  || |||||||||||  |||| ||||
gtaaacctctcagatacttcttatcatattctcaaacatttcctagtaaggttctcttggtattacttattttcatctgaactattgatttgtaac--tgcagGGGTCGAGGATACCTTACCAGTAGAGCCTTGGTATATAGGTGGGCCTGTCATTAAGGGATTTGGTCGTGGGTCAAAGGTACTTGGAGTCCCAACAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtttcttttattgtatgtcatttatatttgaactagtattttaaatttttgcagGGGTGGAGGGAACTTTGCCCCTAGATCCTTGGTATATTGTTGGTCCTGTCGTTAAGGGATTTGGTCGTGACTCGAAGGTACTTGGGATCCCTACAG
                                              tttttgc  CT-rich tract
              tatgtcatttatattt  TA-rich tract