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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagagcagtaatagcttgttctattagcttcaggctttagctagcaagcaaagcccactcctaaactttcttcttattcactttcacgacacaatcctctatcttttattttaatttcttccagATCTTGATTCATTGCATTCCAATTTTATCCACATTGGGTCGGGTGGGGTTTAAGTGCAGTGCTTCCACCCCCAACGATCGTGATTCGATTTCCAAACCTC

Basic information

species Glycine max
transcript GLYMA08G06160.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213617593|gb|DB969305.1|DB969305
EST:     GAAGGAGGCAGAGCAGCAGTGCACAACAACGGAACTCTTTTCAG                         ATCTTGATTCATTGCATTCCAATTTTATCCACATTGGGTCGGGTGGGGTTT
genomic: GAAGGAGGCAGAGCAGCAGTGCACAACAACGGAACTCTTTTCAGgtcagagcag ... tttcttccagATCTTGATTCATTGCATTCCAATTTTATCCACATTGGGTCGGGTGGGGTTT
EST: gi|8283138|gb|BE020699.1|BE020699
EST:     AGAGCAGCAGTGCACAACAACGGAACTCTTTTCAG                         ATCTTGATTCATTGCATTCCAATTTTATCCACATTGGGTCGGGTGGGGTTT
genomic: AGAGCAGCAGTGCACAACAACGGAACTCTTTTCAGgtcagagcag ... tttcttccagATCTTGATTCATTGCATTCCAATTTTATCCACATTGGGTCGGGTGGGGTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttcttattcactttcacgacacaatcctctatcttttattttaatttcttccagATCTTGATTCATTGCATTCCAATTTTATCCACATTGGGTCGGGTGGGGTTTAAGTGCAGTGCTTCCACCCCCAACGATCGTGATTCGATTTCCAAACCTC
                                       ttttaat  putative branch site (score: 3)
 tcctctatcttttatt  CT-rich tract
 tctatcttttatttta  TA-rich tract