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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgcttttatgttatgtcattcatgcaaatatataatatgtgaaaactgaaaacttgtattcctgcacattaattcatgttagattctttatataattcatgttcattgtagtctgaaaaatgaacttgcagATGGGAAAGGTTGGAGAGAAGCTTGATATCGACTTTGTAGTTTCCACTGGAGACAACTTCTATGACAATGGACTAACTAGTGACCATGACAACGCGTTTC

Basic information

species Glycine max
transcript GLYMA08G06090.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G06090.1 (Glycine max), 3'ss of exon 1
lower sequence: AC202435.3_FGT003 (Zea mays), 3'ss of exon 6
gtttgcttttatgttatgtcattcatgcaaatatataatatgtgaaaactgaaaacttgtattcctgcacatta-attcatgttagattctttatataattcatgttcattgtagtctgaaa--aatgaacttgcagATGGGAAAGGTTGGAGAGAAGCTTGATATCGACTTTGTAGTTTCCACTGGAGACAACTTCTATGACAATGGACTAACTAGTGACCATGACAACGCGTTTC
                                     |     |   |||||    |  | ||   |  ||  | |||    ||||  |||   ||  ||   ||  |   | | | || ||  |||     || ||||||||| ||| || |||||||| ||||||||||||||  | ||||| || |||||||||||  | || || || |   | |  || ||| | || ||| 
-------------------------------------acgcacgggcactgacctataatgttgaagttcagaatatttgacttaggatctaactaatatgtttggcctgggaaatttgcaatcaatttttatgtagATGGGAAGGGTCGGGGAGAAGCTCGATATCGACTTTGTTATATCCACCGGGGACAACTTCTACAAGAACGGCCTCAAGGGCGTGCACGACCAGGCATTTA

upper sequence: GLYMA08G06090.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G351232_T01 (Zea mays), 3'ss of exon 8
gtttgcttttatgttatgtcattcatgcaaatatataatatgtgaaaactgaaaacttgtattcctgcacatta-attcatgttagattctttatataattcatgttcattgtagtctgaaa--aatgaacttgcagATGGGAAAGGTTGGAGAGAAGCTTGATATCGACTTTGTAGTTTCCACTGGAGACAACTTCTATGACAATGGACTAACTAGTGACCATGACAACGCGTTTC
                                     |     |   |||||    |  | ||   |  ||  | |||    ||||  |||   ||  ||   ||  |   | | | || ||  |||     || ||||||||| ||| || |||||||| ||||||||||||||  | ||||| || |||||||||||  | || || || |   | |  |  ||| | || ||| 
-------------------------------------acgcacgggcactgacctataatgttaaagttcagaatatttgacttaggatctaactaatatgtttggcctgagaaatttgcaatcaattcttatgtagATGGGAAGGGTCGGGGAGAAGCTCGATATCGACTTTGTTATATCCACCGGGGACAACTTCTACAAGAACGGCCTCAAGGGCGTGCGCGACCAGGCATTTA

upper sequence: GLYMA08G06090.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G152447_T01 (Zea mays), 3'ss of exon 1
gtttgcttttatgttatgtcattcatgcaaatatataatatgtgaaaactgaaaacttgtattcctgcacattaattcatgttagattctttatataattcatgttcattgtagtctgaaa--aatgaacttgcagATGGGAAAGGTTGGAGAGAAGCTTGATATCGACTTTGTAGTTTCCACTGGAGACAACTTCTATGACAATGGACTAACTAGTGACCATGACAACGCGTTTC
                                | ||  | | | ||||    ||  ||| | | | | | |||        ||||  |||   ||  ||   ||  |   | | | || ||   ||     || ||||||||| ||| || |||||||| ||||||||||||||  | ||||| || |||||||||||  | || || || |   | |  |  ||| | || ||| 
--------------------------------agattttttttaaaaaaaacaatgttgaagttcagaatatttgac----ttaggatctaactaatatgtttggcctgagaaatttgcaatcgattcttatgtagATGGGAAGGGTCGGGGAGAAGCTCGATATCGACTTTGTTATATCCACCGGGGACAACTTCTACAAGAACGGCCTCAAGGGCGTGCGCGACCAGGCATTTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298164755|gb|HO014400.1|HO014400
EST:     GTGACTGGGGAAGAAGAGGCGCTTACAACCAATCACAAGTTTCTTTCCAG                         ATGGGAAAGGTTGGAGAGAAGCTTGATATCGACTTTGTAGTTTCCACTGGA
genomic: GTGACTGGGGAAGAAGAGGCGCTTACAACCAATCACAAGTTTCTTTCCAGgtttgctttt ... gaacttgcagATGGGAAAGGTTGGAGAGAAGCTTGATATCGACTTTGTAGTTTCCACTGGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttagattctttatataattcatgttcattgtagtctgaaaaatgaacttgcagATGGGAAAGGTTGGAGAGAAGCTTGATATCGACTTTGTAGTTTCCACTGGAGACAACTTCTATGACAATGGACTAACTAGTGACCATGACAACGCGTTTC
      attctttatataattc  TA-rich tract