Sequence
atgc intronic sequence ATGC exonic sequencegtttgcttttatgttatgtcattcatgcaaatatataatatgtgaaaactgaaaacttgtattcctgcacattaattcatgttagattctttatataattcatgttcattgtagtctgaaaaatgaacttgcagATGGGAAAGGTTGGAGAGAAGCTTGATATCGACTTTGTAGTTTCCACTGGAGACAACTTCTATGACAATGGACTAACTAGTGACCATGACAACGCGTTTC
Basic information
species | Glycine max |
transcript | GLYMA08G06090.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G06090.1 (Glycine max), 3'ss of exon 1
lower sequence: AC202435.3_FGT003 (Zea mays), 3'ss of exon 6
gtttgcttttatgttatgtcattcatgcaaatatataatatgtgaaaactgaaaacttgtattcctgcacatta-attcatgttagattctttatataattcatgttcattgtagtctgaaa--aatgaacttgcagATGGGAAAGGTTGGAGAGAAGCTTGATATCGACTTTGTAGTTTCCACTGGAGACAACTTCTATGACAATGGACTAACTAGTGACCATGACAACGCGTTTC
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-------------------------------------acgcacgggcactgacctataatgttgaagttcagaatatttgacttaggatctaactaatatgtttggcctgggaaatttgcaatcaatttttatgtagATGGGAAGGGTCGGGGAGAAGCTCGATATCGACTTTGTTATATCCACCGGGGACAACTTCTACAAGAACGGCCTCAAGGGCGTGCACGACCAGGCATTTA
upper sequence: GLYMA08G06090.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G351232_T01 (Zea mays), 3'ss of exon 8
gtttgcttttatgttatgtcattcatgcaaatatataatatgtgaaaactgaaaacttgtattcctgcacatta-attcatgttagattctttatataattcatgttcattgtagtctgaaa--aatgaacttgcagATGGGAAAGGTTGGAGAGAAGCTTGATATCGACTTTGTAGTTTCCACTGGAGACAACTTCTATGACAATGGACTAACTAGTGACCATGACAACGCGTTTC
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-------------------------------------acgcacgggcactgacctataatgttaaagttcagaatatttgacttaggatctaactaatatgtttggcctgagaaatttgcaatcaattcttatgtagATGGGAAGGGTCGGGGAGAAGCTCGATATCGACTTTGTTATATCCACCGGGGACAACTTCTACAAGAACGGCCTCAAGGGCGTGCGCGACCAGGCATTTA
upper sequence: GLYMA08G06090.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G152447_T01 (Zea mays), 3'ss of exon 1
gtttgcttttatgttatgtcattcatgcaaatatataatatgtgaaaactgaaaacttgtattcctgcacattaattcatgttagattctttatataattcatgttcattgtagtctgaaa--aatgaacttgcagATGGGAAAGGTTGGAGAGAAGCTTGATATCGACTTTGTAGTTTCCACTGGAGACAACTTCTATGACAATGGACTAACTAGTGACCATGACAACGCGTTTC
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--------------------------------agattttttttaaaaaaaacaatgttgaagttcagaatatttgac----ttaggatctaactaatatgtttggcctgagaaatttgcaatcgattcttatgtagATGGGAAGGGTCGGGGAGAAGCTCGATATCGACTTTGTTATATCCACCGGGGACAACTTCTACAAGAACGGCCTCAAGGGCGTGCGCGACCAGGCATTTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|298164755|gb|HO014400.1|HO014400EST: GTGACTGGGGAAGAAGAGGCGCTTACAACCAATCACAAGTTTCTTTCCAG ATGGGAAAGGTTGGAGAGAAGCTTGATATCGACTTTGTAGTTTCCACTGGA
genomic: GTGACTGGGGAAGAAGAGGCGCTTACAACCAATCACAAGTTTCTTTCCAGgtttgctttt ... gaacttgcagATGGGAAAGGTTGGAGAGAAGCTTGATATCGACTTTGTAGTTTCCACTGGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgttagattctttatataattcatgttcattgtagtctgaaaaatgaacttgcagATGGGAAAGGTTGGAGAGAAGCTTGATATCGACTTTGTAGTTTCCACTGGAGACAACTTCTATGACAATGGACTAACTAGTGACCATGACAACGCGTTTC
attctttatataattc TA-rich tract