Sequence
atgc intronic sequence ATGC exonic sequencegtttctttctatctttctatctactcttattacttcattccatttatttatttgtgctcttcaattgcagAATCTTCTCTCCAGACTCTGCTTGCGAGGTCATCGAAGCTGAAAGGCATTCTCATGTTTTCTACGAGGCCGAACCCGATATCTGGATAGTCATTGTTCGT
Basic information
species | Glycine max |
transcript | GLYMA08G05260.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G05260.2 (Glycine max), 3'ss of exon 1
lower sequence: AT1G16020.2 (Arabidopsis thaliana), 3'ss of exon 2
----------------------------------------------------------------------------------------------------gtttctttctatctttctatc--tactct-tattacttcattccatttattta---tttgtgct-cttcaattgcagAATCTTCTCTCCAGACTCTGCTTGCGAGGTCATCGAAGCTGAAAGGCATTCTCATGTTTTCTACGAGGCCGAACCCGATATCTGGATAGTCATTGTTCGT
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gtcagctgctatagattcttcttctttttgaacactgtgagatgtgtttttacaattgctggtgatctagatttggttgcatttgtgacttgttcgataaattaagtcagggtcgttaatcgatagtctgtgtagatcttcttcatgttttgaggcttggtgtgactattaatgcagACTTTTCTCTCCGGAGGCGGCTTGTGAAGTGATCGAAGCAGAAAGACATTCCCATGTTTTCTATGAGGCTGAACCTGATATCTGGATGGTTATG------
upper sequence: GLYMA08G05260.2 (Glycine max), 3'ss of exon 1
lower sequence: AT1G80910.1 (Arabidopsis thaliana), 3'ss of exon 2
----------------------------------------------------------------------------------gtttctttctatctttctatctactcttattacttcattccatttatttatttgtgctcttcaattgcagAATCTTCTCTCCAGACTCTGCTTGCGAGGTCATCGAAGCTGAAAGGCATTCTCATGTTTTCTACGAGGCCGAACCCGATATCTGGATAGTCATTGTTCGT
|| ||| | || | || || | | | | ||| || | || |||| | ||||| || || | ||||| ||||| || ||||| || || ||||| ||||||||||| |||||||| |||||||||||||| |||||
gttagctactagagattttccttctttacacagatttttcgagttcatggattgattgatgttgtctcatgttcacataaattttgagcgttattagcttttcctgtattgttgggtgttcctgagacgtggtttatggaatataaacacagACTTTTCTCCCCGGAGGCAGCTTGTGAGGTAATTGAAGCAGAGAGACATTCCCATGTTTTCTATGAGGCCGAGCCCGATATCTGGATGGTCATG------
upper sequence: GLYMA08G05260.2 (Glycine max), 3'ss of exon 1
lower sequence: Vv01s0011g06030.t01 (Vitis vinifera), 3'ss of exon 1
--------------------gtttctttctatctt--tctatctactcttattac---ttcattccatttatttatttgtgct-cttcaatt----gcagAATCTTCTCTCCAGACTCTGCTTGCGAGGTCATCGAAGCTGAAAGGCATTCTCATGTTTTCTACGAGGCCGAACCCGATATCTGGATAGTCATTGTTCGT
|| | ||| || || | || ||| || ||||| ||||||| | | || || |||||||||| |||||||| ||||||| ||||| || ||||| || ||||||||||||||||| | |||| || || ||||| ||||| |||||
tgatttgatttccatgtggtgtccaaacatgccttgatcaatttttcctcattgtctattgtttccagttatttaaaggcataacatcggttttgtgcagAATCTTTTCTCCAGAGGCTGCTTGTGAGGTTATAGAAGCAGAGAGGCATTCTCATGTTTTTCATCAGGCTGAGCCAGATATTTGGATGGTCATG------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|15813495|gb|BI785770.1|BI785770EST: AAGCAACTCTCCGTCATTGGCCTCAGCGAAGGACTCATCACTTTCACTAT AATCTTCTCTCCAGACTCTGCTTGCGAGGTCATCGAAGCTGAAAGGCATTC
genomic: AAGCAACTCTCCGTCATTGGCCTCAGCGAAGGACTCATCACTTTCACTAGgtttctttct ... tcaattgcagAATCTTCTCTCCAGACTCTGCTTGCGAGGTCATCGAAGCTGAAAGGCATTC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tctatctactcttattacttcattccatttatttatttgtgctcttcaattgcagAATCTTCTCTCCAGACTCTGCTTGCGAGGTCATCGAAGCTGAAAGGCATTCTCATGTTTTCTACGAGGCCGAACCCGATATCTGGATAGTCATTGTTCGT
tgctcttc CT-rich tract
ttattacttcattcca TA-rich tract