1 5' 3' |
...agctgctaacactatttctcattttttattgtcctttgaagtaatttgttaggcattttctgatttatccgtgtccataatgtcacttgtgtttttacagGCTACTTTTGACTGTTTGCTGAAAAGCTACGGTTTTCTAACACTGGAGTTCTGGAAGGAGACTCGGTTCTCCAAATCACCATTCCAAGAGTACACAGATC
species | Glycine max |
transcript | GLYMA08G05090.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCTTCACTTCCTCAAGGGGTTCCACCAAAACCCTCGGAAATTTCGTCAAG GCTACTTTTGACTGTTTGCTEST: gi|151410861|gb|EV280676.1|EV280676
genomic: TCTTCACTTCCTCAAGGGGTTCCACCAAAACCCTCGGAAATTTCGTCAAGgttcaattct ... gtttttacagGCTACTTTTGACTGTTTGCT
EST: TCTTCACTTCCTCAAGGGGTTCCACCAAAACCCTCGGAAATTTCGTCAAG GCTACTTTTGACTGTTTGCTGAAAAGCTACGGTTTTCTAACACTGGAGTTCEST: gi|19269471|gb|BM885727.1|BM885727
genomic: TCTTCACTTCCTCAAGGGGTTCCACCAAAACCCTCGGAAATTTCGTCAAGgttcaattct ... gtttttacagGCTACTTTTGACTGTTTGCTGAAAAGCTACGGTTTTCTAACACTGGAGTTC
EST: TCTTCACTTCCTCAAGGGGTTCCACCAAAACCCTCGGAAATTTCGTCAAG GCTACTTTTGACTGTTTGCTGAAAAGCTACGGTTTTCTAACACTGGAGTTC
genomic: TCTTCACTTCCTCAAGGGGTTCCACCAAAACCCTCGGAAATTTCGTCAAGgttcaattct ... gtttttacagGCTACTTTTGACTGTTTGCTGAAAAGCTACGGTTTTCTAACACTGGAGTTC
ttgttaggcattttctgatttatccgtgtccataatgtcacttgtgtttttacagGCTACTTTTGACTGTTTGCTGAAAAGCTACGGTTTTCTAACACTGGAGTTCTGGAAGGAGACTCGGTTCTCCAAATCACCATTCCAAGAGTACACAGATC
ttctgat putative branch site (score: 3)
tgttttt putative PPT
attttctgatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agctgctaacactatttctcattttttattgtcctttgaagtaatttgttaggcattttctgatttatccgtgtccataatgtcacttgtgtttttacagGCTACTTTTGACTGTTTGCTGAAAAGCTACGGTTTTCTAACACTGGAGTTCTGGAAGGAGACTCGGTTCTCCAAATCACCATTCCAAGAGTACACAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - -ctaacac
- - - - - - - - - - - - - - - -tcctttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccgtgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtcact