1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatgttctgtttaaccatttcactcaattgctagcttcatcaattaagttatatattttcatttcatcgtatcctgttataaattaattaaaccaatgtttcaatcttcttgacacagGGTAATAGGAGAAGTGGTGATGGTGAAAAACTTGCAGAACCTTTTCTCAGGCTTGGAGCCCTTGCTTAGAAGAGTG
species | Glycine max |
transcript | GLYMA08G04920.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCACCAGGCGATAAACGGATGAGAACTACACCAAGACCTTCTTTTGCTTC GGTAATAGGAGAAGTGGTGATGGTGAAAAACTTGCAGAACCTTTTCTCAGGEST: gi|120533732|gb|EH261865.1|EH261865
genomic: CCACCAGGCGATAAACGGATGAGAACTACACCAAGACCTTCTTTTGCTTCgtatgttctg ... cttgacacagGGTAATAGGAGAAGTGGTGATGGTGAAAAACTTGCAGAACCTTTTCTCAGG
EST: CCACCAGGCGATAAACGGATGAGAACTACACCAAGACCTTCTTTTGCTTC GGTAATAGGAGAAGTGGTGATGGTGAAAAACTTGCAGAACCTTTTCTCAGGEST: gi|120532881|gb|EH261014.1|EH261014
genomic: CCACCAGGCGATAAACGGATGAGAACTACACCAAGACCTTCTTTTGCTTCgtatgttctg ... cttgacacagGGTAATAGGAGAAGTGGTGATGGTGAAAAACTTGCAGAACCTTTTCTCAGG
EST: CCACCAGGCGATAAACGGATGAGAACTACACCAAGACCTTCTTTTGCTTC GGTAATAGGAGAAGTGGTGATGGTGAAAAACTTGCAGAACCTTTTCTCAGGEST: gi|120532111|gb|EH260244.1|EH260244
genomic: CCACCAGGCGATAAACGGATGAGAACTACACCAAGACCTTCTTTTGCTTCgtatgttctg ... cttgacacagGGTAATAGGAGAAGTGGTGATGGTGAAAAACTTGCAGAACCTTTTCTCAGG
EST: CCACCAGGCGATAAACGGATGAGAACTACACCAAGACCTTCTTTTGCTTC GGTAATAGGAGAAGTGGTGATGGTGAAAAACTTGCAGAACCTTTTCTCAGGEST: gi|120530479|gb|EH258612.1|EH258612
genomic: CCACCAGGCGATAAACGGATGAGAACTACACCAAGACCTTCTTTTGCTTCgtatgttctg ... cttgacacagGGTAATAGGAGAAGTGGTGATGGTGAAAAACTTGCAGAACCTTTTCTCAGG
EST: CCACCAGGCGATAAACGGATGAGAACTACACCAAGACCTTCTTTTGCTTC GGTAATAGGAGAAGTGGTGATGGTGAAAAACTTGCAGAACCTTTTCTCAGG
genomic: CCACCAGGCGATAAACGGATGAGAACTACACCAAGACCTTCTTTTGCTTCgtatgttctg ... cttgacacagGGTAATAGGAGAAGTGGTGATGGTGAAAAACTTGCAGAACCTTTTCTCAGG
tcatcgtatcctgttataaattaattaaaccaatgtttcaatcttcttgacacagGGTAATAGGAGAAGTGGTGATGGTGAAAAACTTGCAGAACCTTTTCTCAGGCTTGGAGCCCTTGCTTAGAAGAGTG
tcttgac putative branch site (score: 3)
tcttctt CT-rich tract
ttataaattaattaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttctgtttaaccatttcactcaattgctagcttcatcaattaagttatatattttcatttcatcgtatcctgttataaattaattaaaccaatgtttcaatcttcttgacacagGGTAATAGGAGAAGTGGTGATGGTGAAAAACTTGCAGAACCTTTTCTCAGGCTTGGAGCCCTTGCTTAGAAGAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG