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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attgcattcttctgaatctagctaggaaattgttgaatttgatgttgatatttgagactagtttgctgcattaaatccttttttctttctctcttgttagGGACCACAATATGTTTGCTCAAATTTCTGGACGTTTGTTTGCATTAACTGTAGCGGAATACA

Basic information

species Glycine max
transcript GLYMA08G04420.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G04420.2 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G043056_T01 (Zea mays), 3'ss of exon 2
attgcattcttctga-atctagctaggaaattgttgaatttgatgttgatatttgagactagtttgctgcattaaatccttttttctttctctcttgt-tagGGACCACAATATGTTTGCTCAAATTTCTGGACGTTTGTTTGCATTAACTGTAGCGGAATACA
     ||  | || | || |  | ||   | | ||   || | ||       |   |       ||  | |  ||||     |    | ||   |||   |||||||||||||||| ||| ||||||||||||| |||||||| |  || || || |||  |||
-acatatcttgctaatatgttacaagagtaatattttgttag-tgcctcctctactgttccacctgaaggaaaaaataacactgatatgctgatttgaacagGGACCACAATATGTCTGCACAAATTTCTGGACCTTTGTTTGTACCAATTGCAGTGGATCACA

upper sequence: GLYMA08G04420.2 (Glycine max), 3'ss of exon 1
lower sequence: AT4G13350.2 (Arabidopsis thaliana), 3'ss of exon 2
attgcattcttctgaatctagctaggaaattgttgaatttgatgttgatatttgagactagtttgctgcattaaatccttttttctttctctcttg-ttagGGACCACAATATGTTTGCTCAAATTTCTGGACGTTTGTTTGCATTAACTGTAGCGGAATACA
 |    || || |   |||    |    ||  ||   |  |||    || |||||||  | ||  |   |  |  |   || |||  | ||  ||  |||||||||||||||||||||| | | ||||||||| |||||||| |  ||||| || ||||||||
gtaagtttttttttgctct--tcatttgatcatt---tccgataaaaat-tttgagagaacttaacgtta--acgtttcttcttcgatatcatttacttagGGACCACAATATGTTTGCACTACTTTCTGGACTTTTGTTTGTACCAACTGCAGTGGAATACA

upper sequence: GLYMA08G04420.2 (Glycine max), 3'ss of exon 1
lower sequence: Vv11s0016g04210.t01 (Vitis vinifera), 3'ss of exon 1
---attgcattcttctgaatctagctaggaaattgttgaatttgatgttgatatttgagac-tagtttgctgcattaaatccttttttctttctctcttgttagGGACCACAATATGTTTGCTCAAATTTCTGGACGTTTGTTTGCATTAACTGTAGCGGAATACA
    ||| | ||    ||    | | |  | ||| || |  || |  | || |  ||| |  |||| |     || ||  |  |  || ||||  ||     ||||||| ||||| || ||| ||||||||||||| ||||||||||  |  ||||| || |||||
aattttgtagtccaaagagctcaccaactacattcttca--ttaacttggaaagatgaaatatagtctatgatatgaaggc--taattttttccttccaaacagGGACCGCAATACGTGTGCACAAATTTCTGGACATTTGTTTGCACAACTTGTAGTGGGATACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatatttgagactagtttgctgcattaaatccttttttctttctctcttgttagGGACCACAATATGTTTGCTCAAATTTCTGGACGTTTGTTTGCATTAACTGTAGCGGAATACA
 tgttgat  putative branch site (score: 4)
                         ttaaatccttttttct  putative PPT
                        attaaatcctttttt  TA-rich tract