1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtacgattgcttttcgattcccttcaatttttcatgtttctaaccgaacaaaattgggatcggtgttgcggttttagGGTTTAGTTTGGTGCGTGCGATGAAGATCGAGGAATTGGACGATGGAGAGTGTAGTAGGGACGAGGAAGAGAAGTGTGAGAGGCAGATTGTGAGCGTTGA
species | Glycine max |
transcript | GLYMA08G03600.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGTGTTTCTCGCTAATTTGCGTCTTCCTTCGTTTCCAAGTCAGCGTTAAG GGTTTAGTTTGGTGCGTGCCATGAAGATCGAGGAATTGGACGATGGAGAGTEST: gi|9564058|gb|BE473567.1|BE473567
genomic: CGTGTTTCTCGCTAATTTGCGTCTTCCTTCGTTTCCAAGTCAGCGTTAAGgtacgattgc ... gcggttttagGGTTTAGTTTGGTGCGTGCGATGAAGATCGAGGAATTGGACGATGGAGAGT
EST: GTTTCTCGCTAATTTGCGTCTTCCTTCGTTTCCAAGTCAGCGTTAAG GGTTTAGTTTGGTGCGTGCGATGAAGATCGAGGAATTGGACGATGGAGAGTEST: gi|6455181|gb|AW185864.1|AW185864
genomic: GTTTCTCGCTAATTTGCGTCTTCCTTCGTTTCCAAGTCAGCGTTAAGgtacgattgc ... gcggttttagGGTTTAGTTTGGTGCGTGCGATGAAGATCGAGGAATTGGACGATGGAGAGT
EST: TCGTTTCCAAGTCAGCGTTAAG GGTTTAGTTTGGTGCGTGCGATGAAGATCGAGGAATTGGACGATGGAGAGTEST: gi|7589646|gb|AW705416.1|AW705416
genomic: TCGTTTCCAAGTCAGCGTTAAGgtacgattgc ... gcggttttagGGTTTAGTTTGGTGCGTGCGATGAAGATCGAGGAATTGGACGATGGAGAGT
EST: CGCTAATTTGCGTCTTCCTTCGTTTCCAAGTCAGCGTTAAG GGTTTAGTTTGGTGCGTGCGATGAAGATCGAGGAATTGGACGATGGAGAGTEST: gi|213598064|gb|DB972252.1|DB972252
genomic: CGCTAATTTGCGTCTTCCTTCGTTTCCAAGTCAGCGTTAAGgtacgattgc ... gcggttttagGGTTTAGTTTGGTGCGTGCGATGAAGATCGAGGAATTGGACGATGGAGAGT
EST: CGTGTTTCTCGCTAATTTGCGTCTTCCTTCGTTTCCAAGTCAGCGTTAAG GGTTTAGTTTGGTGCGTGCGATGAAGATCGAGGAATTGGACGATGGAGAGT
genomic: CGTGTTTCTCGCTAATTTGCGTCTTCCTTCGTTTCCAAGTCAGCGTTAAGgtacgattgc ... gcggttttagGGTTTAGTTTGGTGCGTGCGATGAAGATCGAGGAATTGGACGATGGAGAGT
ttcaatttttcatgtttctaaccgaacaaaattgggatcggtgttgcggttttagGGTTTAGTTTGGTGCGTGCGATGAAGATCGAGGAATTGGACGATGGAGAGTGTAGTAGGGACGAGGAAGAGAAGTGTGAGAGGCAGATTGTGAGCGTTGA
ttctaac putative branch site (score: 1)
aacaaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgattgcttttcgattcccttcaatttttcatgtttctaaccgaacaaaattgggatcggtgttgcggttttagGGTTTAGTTTGGTGCGTGCGATGAAGATCGAGGAATTGGACGATGGAGAGTGTAGTAGGGACGAGGAAGAGAAGTGTGAGAGGCAGATTGTGAGCGTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT