Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agaagaatttatggaattccaaataataacaatggatctggtgttatatattgttgactttgtgccttattctaaatttggcctttttgttttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGTTGCAGTCCGCAGCATGTCAAGCATCTCAATTTGTATCCAGTCGTGGAAC

Basic information

species Glycine max
transcript GLYMA08G03410.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208104725|gb|GD905066.1|GD905066
EST:     GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|298194988|gb|HO043516.1|HO043516
EST:     GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|21887822|gb|BQ741035.1|BQ741035
EST:     GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|298184829|gb|HO030042.1|HO030042
EST:     GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGCTGCAGAAGT
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|298170531|gb|HO019155.1|HO019155
EST:     GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|192308213|gb|FK000849.1|FK000849
EST:     GGAGAGCTATCTTCTCAATTTCTGATCACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|298167660|gb|HO012923.1|HO012923
EST:     GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|31456239|gb|CD398267.1|CD398267
EST:     GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAG                         GGTTTAGT-CTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|192297967|gb|FG988395.1|FG988395
EST:     CACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: CACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|298172636|gb|HO019676.1|HO019676
EST:     GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|298169757|gb|HO021117.1|HO021117
EST:     GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|298193126|gb|HO033560.1|HO033560
EST:     GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|9983405|gb|BE657513.1|BE657513
EST:     GGAGAGCTANCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|298169617|gb|HO020977.1|HO020977
EST:     GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|193488195|gb|FK457068.1|FK457068
EST:     CTATCTTCTCAATTTCCGTATCACTGCATTGGTTCTGTTGACGAG                         GGTTTGGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: CTATCTTCTCAATTTCCG-ATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|208108750|gb|GD903052.1|GD903052
EST:     GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAA
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAA
EST: gi|298170047|gb|HO018671.1|HO018671
EST:     GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|192295279|gb|FG985933.1|FG985933
EST:     GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|21594152|gb|BQ610068.1|BQ610068
EST:     GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|207780645|gb|GD751222.1|GD751222
EST:     GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTG
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTG
EST: gi|8827251|gb|BE210981.1|BE210981
EST:     GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|207795240|gb|GD764445.1|GD764445
EST:     GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|151405342|gb|EV275156.1|EV275156
EST:     GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|151396659|gb|EV266532.1|EV266532
EST:     GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|298170430|gb|HO019054.1|HO019054
EST:     GGAGAGCTATCTTCTCGATTTCCGATCACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|298194973|gb|HO043501.1|HO043501
EST:     GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|193479783|gb|FK445464.1|FK445464
EST:     CACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: CACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|208203779|gb|GE003154.1|GE003154
EST:     TTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: TTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|298178320|gb|HO024055.1|HO024055
EST:     GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|193569675|gb|FK524438.1|FK524438
EST:     GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|298171529|gb|HO016561.1|HO016561
EST:     GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|21994187|gb|BQ785715.1|BQ785715
EST:     GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|7589371|gb|AW705146.1|AW705146
EST:     GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|298195986|gb|HO044377.1|HO044377
EST:     GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|21602133|gb|BQ612464.1|BQ612464
EST:     GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|193459964|gb|FK428749.1|FK428749
EST:     GGAGNGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|208119172|gb|GD915495.1|GD915495
EST:     GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|298180326|gb|HO025527.1|HO025527
EST:     GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|298177215|gb|HO023462.1|HO023462
EST:     GGAGAGCTGTCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGGG                         GGTTTTGCTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|31307501|gb|CD392704.1|CD392704
EST:     GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAG                         GG-TTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|17153517|gb|BM143450.1|BM143450
EST:     GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|193705203|gb|FK642621.1|FK642621
EST:     GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|6913995|gb|AW395525.1|AW395525
EST:     GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|298171876|gb|HO021468.1|HO021468
EST:     GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTCGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|298197602|gb|HO045081.1|HO045081
EST:     GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCGTACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|298194852|gb|HO043324.1|HO043324
EST:     GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|14125177|gb|BG789615.1|BG789615
EST:     GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|151394795|gb|EV264666.1|EV264666
EST:     GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|298177387|gb|HO027168.1|HO027168
EST:     GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|151397253|gb|EV267126.1|EV267126
EST:     GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAA                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|192325069|gb|FK016180.1|FK016180
EST:     GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|193547947|gb|FK504780.1|FK504780
EST:     GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|31462949|gb|CD404977.1|CD404977
EST:     GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|192326897|gb|FK015139.1|FK015139
EST:     GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTCGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|151404611|gb|EV274425.1|EV274425
EST:     GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|9440099|gb|BE440610.1|BE440610
EST:     GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|209706214|gb|BW680905.1|BW680905
EST:     GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|20498210|gb|BQ273140.1|BQ273140
EST:     GGAGATCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|298185550|gb|HO030763.1|HO030763
EST:     GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|192332241|gb|FK023890.1|FK023890
EST:     GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|151399311|gb|EV269182.1|EV269182
EST:     GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|193370692|gb|FK334132.1|FK334132
EST:     GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|208255806|gb|GE052785.1|GE052785
EST:     GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|207788585|gb|GD763335.1|GD763335
EST:     GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAA
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAA
EST: gi|192330273|gb|FK019853.1|FK019853
EST:     GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|192309851|gb|FK001395.1|FK001395
EST:     GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|208258488|gb|GE052905.1|GE052905
EST:     GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|192300149|gb|FG989271.1|FG989271
EST:     GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|213620052|gb|DB967437.1|DB967437
EST:     GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|207764930|gb|GD735371.1|GD735371
EST:     GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGC
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGC
EST: gi|193377822|gb|FK341486.1|FK341486
EST:     GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|18718017|gb|BM523018.1|BM523018
EST:     GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|10846422|gb|BF069319.1|BF069319
EST:     GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|15662845|gb|BI700216.1|BI700216
EST:     GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|21601049|gb|BQ611380.1|BQ611380
EST:     GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|22541827|gb|BU091670.1|BU091670
EST:     GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|10237989|gb|BE806877.1|BE806877
EST:     GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGG
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGG
EST: gi|38191870|gb|CF921076.1|CF921076
EST:     GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|193631124|gb|FK583669.1|FK583669
EST:     ATCACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: ATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|9259653|gb|BE347800.1|BE347800
EST:     GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
EST: gi|298178721|gb|HO024456.1|HO024456
EST:     GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAG                         GGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT
genomic: GGAGAGCTATCTTCTCAATTTCCGATCACTGCATTGGTTCTGTTGACGAGgtaacgctct ... tttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatattgttgactttgtgccttattctaaatttggcctttttgttttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGTTGCAGTCCGCAGCATGTCAAGCATCTCAATTTGTATCCAGTCGTGGAAC
                        ttctaaa  putative branch site (score: 2)
                                    cctttttgtttt  putative PPT
                     ttattctaaattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
agaagaatttatggaattccaaataataacaatggatctggtgttatatattgttgactttgtgccttattctaaatttggcctttttgttttgggccagGGTTTTGTTCTACTTGACTTGCATACTTGATGGCGTCAAAGTTGCAGAAGTTGCAGTCCGCAGCATGTCAAGCATCTCAATTTGTATCCAGTCGTGGAAC

- - - - - - - - - ccaaata
- - - - - - - - - - - - - - -caatgga
- - - - - - - - - - - - - - - - - - tctggtg
- - - - - - - - - - - - - - - - - - - - - - - - - -tgttgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcctttt