1 5' 3' | 2 5' 3' | 3 5' 3' |
gtatgcgtatccgcgtcttcttaactttttttgtttctcaactttttcagattttagggtttgttcaggttttcactgttttcgctttttttcgtgagatcagTGACTAGTTCGTGAATATTCGCTTGAGATTTGACTGCGAAGCTGGTTTTAGAG
species | Glycine max |
transcript | GLYMA08G03010.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGACCACCCTCTTATCACAGCTCGCGTTAACTTAAGCCCTCTCCGTTGAG TGACTAGTTCGTGAATATTCGCTTGAGATTTGACTGCGAAGCTGGTTTTAGEST: gi|16996975|gb|BM086347.1|BM086347
genomic: CGACCACCCTCTTATCACAGCTCGCGTTAACTTAAGCCCTCTCCGTTGAGgtatgcgtat ... gtgagatcagTGACTAGTTCGTGAATATTCGCTTGAGATTTGACTGCGAAGCTGGTTTTAG
EST: CGACCACCCTCTTATCACAGCTCGCGTTAACTTAAGCCCTCTCCGTTGAG TGACTAGTTCGTGAATATTCGCTTGAGATTTGACTGCGAAGCTGGTTTTAGEST: gi|213615284|gb|DB963478.1|DB963478
genomic: CGACCACCCTCTTATCACAGCTCGCGTTAACTTAAGCCCTCTCCGTTGAGgtatgcgtat ... gtgagatcagTGACTAGTTCGTGAATATTCGCTTGAGATTTGACTGCGAAGCTGGTTTTAG
EST: CGACCACCCTCTTATCACAGCTCGCGTTAACTTAAGCCCTCTCCGTTGAG TGACTAGTTCGTGAATATTCGCTTGAGATTTGACTGCGAAGCTGGTTTTAG
genomic: CGACCACCCTCTTATCACAGCTCGCGTTAACTTAAGCCCTCTCCGTTGAGgtatgcgtat ... gtgagatcagTGACTAGTTCGTGAATATTCGCTTGAGATTTGACTGCGAAGCTGGTTTTAG
agattttagggtttgttcaggttttcactgttttcgctttttttcgtgagatcagTGACTAGTTCGTGAATATTCGCTTGAGATTTGACTGCGAAGCTGGTTTTAGAG
ttttcgctttttttcg CT-rich tract
ttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcgtatccgcgtcttcttaactttttttgtttctcaactttttcagattttagggtttgttcaggttttcactgttttcgctttttttcgtgagatcagTGACTAGTTCGTGAATATTCGCTTGAGATTTGACTGCGAAGCTGGTTTTAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG