1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgatcttttccgaattttttttttgtattttcgatttcagaaagtgttcttttgcataaattgttgtctttttccatttggggtgcgttggattgacatggatcaggtcatcagGATGATGAGTGATTACAAGGTGGAGACGGTCAACGATGGCATGCAAGAGTTCTTTGTGGAATTCCACGGACCCAAAGACA
species | Glycine max |
transcript | GLYMA08G01940.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AG GATGATGAGTGATTACAAGGTGGAGACGGTCAACGATGGCATGCAAGAGTEST: gi|298182580|gb|HO031315.1|HO031315
genomic: --gtgatctttt ... aggtcatcagGATGATGAGTGATTACAAGGTGGAGACGGTCAACGATGGCATGCAAGAGT
EST: AG GATGATGAGTGATTACAAGGTGGAGACGGTCAACGATGGCATGCAAGAGTEST: gi|298182580|gb|HO031315.1|HO031315
genomic: --gtgatctttt ... aggtcatcagGATGATGAGTGATTACAAGGTGGAGACGGTCAACGATGGCATGCAAGAGT
EST: AG GATGATGAGTGATTACAAGGTGGAGACGGTCAACGATGGCATGCAAGAGTEST: gi|298182580|gb|HO031315.1|HO031315
genomic: --gtgatctttt ... aggtcatcagGATGATGAGTGATTACAAGGTGGAGACGGTCAACGATGGCATGCAAGAGT
EST: AG GATGATGAGTGATTACAAGGTGGAGACGGTCAACGATGGCATGCAAGAGTEST: gi|18039609|gb|BM307903.1|BM307903
genomic: --gtgatctttt ... aggtcatcagGATGATGAGTGATTACAAGGTGGAGACGGTCAACGATGGCATGCAAGAGT
EST: CAATGTCTTCCCCAAGCAAACGCCGAGACATGGACTTGATGAA---G-CT GATGATGAGTGATTACAAGGTGGAGACGGTCAACGATGGCATGCAAGAGTTEST: gi|193562259|gb|FK521268.1|FK521268
genomic: CAATGTCTTCCCCAAGCAAACGCCGAGACATGGACTTGATGAAGCTGTCTgtgatctttt ... aggtcatcagGATGATGAGTGATTACAAGGTGGAGACGGTCAACGATGGCATGCAAGAGTT
EST: AG GATGATGAGTGATTACAAGGTGGAGACGGTCAACGATGGCATGCAAGAGTEST: gi|193562259|gb|FK521268.1|FK521268
genomic: --gtgatctttt ... aggtcatcagGATGATGAGTGATTACAAGGTGGAGACGGTCAACGATGGCATGCAAGAGT
EST: AG GATGATGAGTGATTACAAGGTGGAGACGGTCAACGATGGCATGCAAGAGTEST: gi|193562259|gb|FK521268.1|FK521268
genomic: --gtgatctttt ... aggtcatcagGATGATGAGTGATTACAAGGTGGAGACGGTCAACGATGGCATGCAAGAGT
EST: AG GATGATGAGTGATTACAAGGTGGAGACGGTCAACGATGGCATGCAAGAGTEST: gi|193562259|gb|FK521268.1|FK521268
genomic: --gtgatctttt ... aggtcatcagGATGATGAGTGATTACAAGGTGGAGACGGTCAACGATGGCATGCAAGAGT
EST: AG GATGATGAGTGATTACAAGGTGGAGACGGTCAACGATGGCATGCAAGAGTEST: gi|193681729|gb|FK620903.1|FK620903
genomic: --gtgatctttt ... aggtcatcagGATGATGAGTGATTACAAGGTGGAGACGGTCAACGATGGCATGCAAGAGT
EST: AG GATGATGAGTGATTACAAGGTGGAGACGGTCAACGATGGCATGCAAGAGTEST: gi|193681729|gb|FK620903.1|FK620903
genomic: --gtgatctttt ... aggtcatcagGATGATGAGTGATTACAAGGTGGAGACGGTCAACGATGGCATGCAAGAGT
EST: AG GATGATGAGTGATTACAAGGTGGAGACGGTCAACGATGGCATGCAAGAGTEST: gi|193681729|gb|FK620903.1|FK620903
genomic: --gtgatctttt ... aggtcatcagGATGATGAGTGATTACAAGGTGGAGACGGTCAACGATGGCATGCAAGAGT
EST: AG GATGATGAGTGATTACAAGGTGGAGACGGTCAACGATGGCATGCAAGAGTEST: gi|193681729|gb|FK620903.1|FK620903
genomic: --gtgatctttt ... aggtcatcagGATGATGAGTGATTACAAGGTGGAGACGGTCAACGATGGCATGCAAGAGT
EST: AG GATGATGAGTGATTACAAGGTGGAGACGGTCAACGATGGCATGCAAGAGTEST: gi|192324802|gb|FK016873.1|FK016873
genomic: --gtgatctttt ... aggtcatcagGATGATGAGTGATTACAAGGTGGAGACGGTCAACGATGGCATGCAAGAGT
EST: CAATGTCTTCCCCAAGCAAACGCCGAGACATGGACTTGATGAA---G-CT GATGATGAGTGATTACAAGGTGGAGACGGTCAACGATGGCATGCAAGAGTTEST: gi|298198506|gb|HO040045.1|HO040045
genomic: CAATGTCTTCCCCAAGCAAACGCCGAGACATGGACTTGATGAAGCTGTCTgtgatctttt ... aggtcatcagGATGATGAGTGATTACAAGGTGGAGACGGTCAACGATGGCATGCAAGAGTT
EST: AG GATGATGAGGGATTACAAGGTGGAGACGGTCAACGATGGCATGCGAGAGTEST: gi|298198506|gb|HO040045.1|HO040045
genomic: --gtgatctttt ... aggtcatcagGATGATGAGTGATTACAAGGTGGAGACGGTCAACGATGGCATGCAAGAGT
EST: AG GATGATGAGGGATTACAAGGTGGAGACGGTCAACGATGGCATGCGAGAGTEST: gi|298198506|gb|HO040045.1|HO040045
genomic: --gtgatctttt ... aggtcatcagGATGATGAGTGATTACAAGGTGGAGACGGTCAACGATGGCATGCAAGAGT
EST: AG GATGATGAGGGATTACAAGGTGGAGACGGTCAACGATGGCATGCGAGAGTEST: gi|298198506|gb|HO040045.1|HO040045
genomic: --gtgatctttt ... aggtcatcagGATGATGAGTGATTACAAGGTGGAGACGGTCAACGATGGCATGCAAGAGT
EST: AG GATGATGAGGGATTACAAGGTGGAGACGGTCAACGATGGCATGCGAGAGT
genomic: --gtgatctttt ... aggtcatcagGATGATGAGTGATTACAAGGTGGAGACGGTCAACGATGGCATGCAAGAGT
attgttgtctttttccatttggggtgcgttggattgacatggatcaggtcatcagGATGATGAGTGATTACAAGGTGGAGACGGTCAACGATGGCATGCAAGAGTTCTTTGTGGAATTCCACGGACCCAAAGACA
gattgac putative branch site (score: 3)
tcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgatcttttccgaattttttttttgtattttcgatttcagaaagtgttcttttgcataaattgttgtctttttccatttggggtgcgttggattgacatggatcaggtcatcagGATGATGAGTGATTACAAGGTGGAGACGGTCAACGATGGCATGCAAGAGTTCTTTGTGGAATTCCACGGACCCAAAGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA