1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tgcatacttatttacatgcctgaagtcttaagacttgtattatttgattcaaatatgcttttgttattgtgcatgtcataatttcttgttcattttgaagTCATTGGATGCTGTGGTGAGGGCGACAGGGGGAAGAGGCCCGTGATGACCAAGATAGCAACAGATAAAAGTGAAGTGACCATGCTGACATCTGACAATCC
species | Glycine max |
transcript | GLYMA08G01850.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTGTTAGAGAGCTTGGACCTCGCAGGGTTTATAACTG TCATTGGATGCTGTGGTGAGGGCGACAGGGGGAAGAGGCCCGTGATGACCEST: gi|57575436|gb|CX548411.1|CX548411
genomic: CTGTTAGAGAGCTTGGACCTCGCAGGG-TTATAACTGgtatgtttgt ... cattttgaagTCATTGGATGCTGTGGTGAGGGCGACAGGGGGAAGAGGCCCGTGATGACC
EST: CTCGCAGGG-TATAACTG TCCATTGGATGCTGTGGTGAGGGCGACAGGGGGAAGAGGCCCGTGATGACC
genomic: CTCGCAGGGTTATAACTGgtatgtttgt ... cattttgaagT-CATTGGATGCTGTGGTGAGGGCGACAGGGGGAAGAGGCCCGTGATGACC
gattcaaatatgcttttgttattgtgcatgtcataatttcttgttcattttgaagTCATTGGATGCTGTGGTGAGGGCGACAGGGGGAAGAGGCCCGTGATGACCAAGATAGCAACAGATAAAAGTGAAGTGACCATGCTGACATCTGACAATCC
atttgat putative branch site (score: 5)
tttcttgttcatttt putative PPT
ttttgttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcatacttatttacatgcctgaagtcttaagacttgtattatttgattcaaatatgcttttgttattgtgcatgtcataatttcttgttcattttgaagTCATTGGATGCTGTGGTGAGGGCGACAGGGGGAAGAGGCCCGTGATGACCAAGATAGCAACAGATAAAAGTGAAGTGACCATGCTGACATCTGACAATCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
-gcatact
- - - - - - - catgcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - gcttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatgtc