Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtaagatgagacgtcaagtttggatctctatctcattgttgatttagtattaaatttctatgtagttgttgtttgtagtaatcatcaactcactcagTTGCCGTAGGTTGTCGTGATCCATCACAACACTTTGTCACTGAAATTCAGAAAAATGGCATCAGCAATGTTTCGTAGGAACATCATCACCCACTACTCCA

Basic information

species Glycine max
transcript GLYMA08G00740.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208298049|gb|GE091024.1|GE091024
EST:     GCTGCAAGTTGTATTATAGGTTGAGTTGAATATTAAG                         TTGCCGTAGGTTGTCGTGATCCATCACAACACTTTGTCACTGAAATTCAGA
genomic: GCTGCAAGTTGTATTATAGGTTGAGTTGAATATTAAGgtagtaagat ... actcactcagTTGCCGTAGGTTGTCGTGATCCATCACAACACTTTGTCACTGAAATTCAGA
EST: gi|209714515|gb|BW684878.1|BW684878
EST:     GGATTTGGCATTTGCTGCAAGTTGTATTATAGGTTGAGTTGAATATTAAG                         TTGCCGTAGGTTGTCGTGATCCATCACAACACTTTGTCACTGAAATTCAGA
genomic: GGATTTGGCATTTGCTGCAAGTTGTATTATAGGTTGAGTTGAATATTAAGgtagtaagat ... actcactcagTTGCCGTAGGTTGTCGTGATCCATCACAACACTTTGTCACTGAAATTCAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttagtattaaatttctatgtagttgttgtttgtagtaatcatcaactcactcagTTGCCGTAGGTTGTCGTGATCCATCACAACACTTTGTCACTGAAATTCAGAAAAATGGCATCAGCAATGTTTCGTAGGAACATCATCACCCACTACTCCA
                                            aactcac  putative branch site (score: 2)
                                              ctcactc  CT-rich tract
     tattaaatttctatgt  TA-rich tract