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...tcttcattatagtgtccctttattttaagtagaaaagggataaatagactaacacagggtagtaaaattgaagttatctactaagatatttccatttcagGTCTCAGAGGTGAGTTTACGCCTGGGCAGAGCTGGTATTGACGTTTTGGACACTCTGGGGAGCAGTATGACAAATTTAAGTGCTGGTGGGTTTGTATCTG
species | Glycine max |
transcript | GLYMA08G00670.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTTTTCCCCACAAGTCTAGGTCAGTAAAATCAAGGCATGCTGTGGCAAAG GTCTCAGAGGTGAGTTTACGCCTGGGCAGAGCTGGTATTGACGTTTTGGACEST: gi|207838877|gb|GD813395.1|GD813395
genomic: CTTTTCCCCACAAGTCTAGGTCAGTAAAATCAAGGCATGCTGTGGCAAAGgttggttatt ... tccatttcagGTCTCAGAGGTGAGTTTACGCCTGGGCAGAGCTGGTATTGACGTTTTGGAC
EST: CTTTTCCCCACAAGTCTAGGTCAGTAAAATCAAGGCATGCTGTGGCAAAG GTCTCAGAGGTGAGTTTACGCCTGGGCAGAGCTGGTATTGACGTTTTGGACEST: gi|208273003|gb|GE070037.1|GE070037
genomic: CTTTTCCCCACAAGTCTAGGTCAGTAAAATCAAGGCATGCTGTGGCAAAGgttggttatt ... tccatttcagGTCTCAGAGGTGAGTTTACGCCTGGGCAGAGCTGGTATTGACGTTTTGGAC
EST: CTTTTCCCCACAAGTCT-GGTCAGTAAAATCAAGGCATGCTGTGGCAAAG GTCTCAGAGGTGAGTTTACGCCTGGGCAGAGCTGGTATTGACGTTTTGGACEST: gi|193418868|gb|FK385220.1|FK385220
genomic: CTTTTCCCCACAAGTCTAGGTCAGTAAAATCAAGGCATGCTGTGGCAAAGgttggttatt ... tccatttcagGTCTCAGAGGTGAGTTTACGCCTGGGCAGAGCTGGTATTGACGTTTTGGAC
EST: TTTTCCCCCACAAGTCTAGGTCAGTAAAATCAAGGCATGCTGTGGCAAAG GTCTCAGAGGTGAGTTTACGCCTGGGCAGAGCTGGTATTGACGTTTTGGAC
genomic: TTTT-CCCCACAAGTCTAGGTCAGTAAAATCAAGGCATGCTGTGGCAAAGgttggttatt ... tccatttcagGTCTCAGAGGTGAGTTTACGCCTGGGCAGAGCTGGTATTGACGTTTTGGAC
agactaacacagggtagtaaaattgaagttatctactaagatatttccatttcagGTCTCAGAGGTGAGTTTACGCCTGGGCAGAGCTGGTATTGACGTTTTGGACACTCTGGGGAGCAGTATGACAAATTTAAGTGCTGGTGGGTTTGTATCTG
gactaac putative branch site (score: 1)
tttccatttc putative PPT
taaaattgaagttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcttcattatagtgtccctttattttaagtagaaaagggataaatagactaacacagggtagtaaaattgaagttatctactaagatatttccatttcagGTCTCAGAGGTGAGTTTACGCCTGGGCAGAGCTGGTATTGACGTTTTGGACACTCTGGGGAGCAGTATGACAAATTTAAGTGCTGGTGGGTTTGTATCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
-cttcatt
- - - - - - tgtccct
- - - - - - - - - - - - - - - - - - - - - - - - ctaacac