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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgcaccttcaattctcaattcaatttttaaacttcaagtcatttcatgtcttgtcttgtcttctatttagGTTCTTCTCAGTCGTTTGAGGTTGTTCCTGAGTCCTGGTTTTCCCTATGAAGATATTCTAACCACATTTCACAATCAGACAGGCATAGTCATGTGCTCCT

Basic information

species Glycine max
transcript GLYMA07G40090.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G40090.1 (Glycine max), 3'ss of exon 1
lower sequence: AT5G49720.1 (Arabidopsis thaliana), 3'ss of exon 3
-----------------------------gtacgcaccttcaattctcaattc-----aatttttaaacttcaagtcatt--tcatgtcttgtct---tgtcttcta----tttagGTTCTTCTCAGTCGTTTGAGGTTGTTCCTGAGTCCTGGTTTTCCCTATGAAGATATTCTAACCACATTTCACAATCAGACAGGCATAGTCATGTGCTCCT
                              || |   |||  ||  |||  ||      ||  ||   ||| |    | |  || || ||  | |   |  ||| |     ||||| | ||  | || || ||||||||||| ||||||||||| | ||| |||||||| |||||||  || || |||||||||||  |||||||||||||||| |
gtcagtccacacataacaacctgctgtgtttatgtttcttagatattcatgtcttcttgatcatttgccttaaccatactactcttgactcttttgaatcccttttgcgattttagTTGCTGTTGAGCCGGTTGAGGTTGTTTCTGAGTCCTGGATATCCATATGAAGAAATTCTAAGGACCTTCCACAATCAGACCAGCATAGTCATGTGCTCAT

upper sequence: GLYMA07G40090.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv12s0035g02180.t01 (Vitis vinifera), 3'ss of exon 3
---------------------gtacgcaccttcaattctca-attcaatttttaaacttcaagtcatttc----atgtcttgtcttgtcttct-atttagGTTCTTCTCAGTCGTTTGAGGTTGTTCCTGAGTCCTGGTTTTCCCTATGAAGATATTCTAACCACATTTCACAATCAGACAGGCATAGTCATGTGCTCCT
                      |  | |   |   ||   | | ||||    | |        ||||| |    |||  || | || | |||| | |||||| || || || |||||||| |||||| |||| ||||| | ||| |||||||| ||||| |  |||||||||||||| ||  ||||| | |||||||| |
tttgcatgttgatcaaataaaattggaattattgtttgcaagagtcaaaaactcatggctggttcattgctgatatgctttatgtttttttcttaattagGTGCTCCTAAGCCGTTTGAGATTGTTCTTGAGCCCTGGGTATCCATATGAAGAAATTCTGAGGACATTTCACAATCAAACCAGCATAATTATGTGCTCAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193664269|gb|FK608793.1|FK608793
EST:     GCTGGGATAACAAGCTTACTGGTGCTCAG                         GTTCTTCTCAGTCGTTTGAGGTTGTTCCTGAGTCCTGGTTTTCCCTATGAA
genomic: GCTGGGATAACAAGCTTACTGGTGCTCAGgtacgcacct ... ttctatttagGTTCTTCTCAGTCGTTTGAGGTTGTTCCTGAGTCCTGGTTTTCCCTATGAA
EST: gi|254320158|gb|GR829346.1|GR829346
EST:     GCCCTGACTACGGTGTCCTCAGCTGGGATAACAAGCTTACTGGTGCTCAG                         GTTCTTCTCAGTCGTTTGAGGTTGTTCCTGAGTCCTGGTTTTCCCTATGAA
genomic: GCCCTGACTACGGTGTCCTCAGCTGGGATAACAAGCTTACTGGTGCTCAGgtacgcacct ... ttctatttagGTTCTTCTCAGTCGTTTGAGGTTGTTCCTGAGTCCTGGTTTTCCCTATGAA
EST: gi|15200976|gb|BI424628.1|BI424628
EST:     GCCCTGACTACGGTGTCCTCAGCTGGGATAACAAGCTTACTGGTGCTCAG                         GTTCTTCTCAGTCGTTTGAGGTTGTTCCTGAGTCCTGGTTTTCCCTATGAA
genomic: GCCCTGACTACGGTGTCCTCAGCTGGGATAACAAGCTTACTGGTGCTCAGgtacgcacct ... ttctatttagGTTCTTCTCAGTCGTTTGAGGTTGTTCCTGAGTCCTGGTTTTCCCTATGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caattcaatttttaaacttcaagtcatttcatgtcttgtcttgtcttctatttagGTTCTTCTCAGTCGTTTGAGGTTGTTCCTGAGTCCTGGTTTTCCCTATGAAGATATTCTAACCACATTTCACAATCAGACAGGCATAGTCATGTGCTCCT
                                 tcttgtcttgtcttct  CT-rich tract
      aatttttaaacttcaa  TA-rich tract