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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattttcatttccttctattcttcggaataatcacaatatctttgtcaaacccttcttgctcacatgtaatttctctctagGTATCAATTGCTAACAAGCAGGTCAACTTTGAACCTGTTAAAATTTCGCTTAAGGATTGTTTGGCATGCAG

Basic information

species Glycine max
transcript GLYMA07G39690.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G39690.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv00s1693g00010.t01 (Vitis vinifera), 3'ss of exon 1
--------------gtattttcatttccttctattcttcggaa--taatcacaatatctttgtcaaacccttcttgctcacatgtaatttctctctag-
               |  |  | |    || |  ||||  ||   |  ||  | |   ||||   |    || ||  |   |  |  ||||  |  ||   ||    |  | || |||    |  |||  |||||||||||| ||||||||||||||||| || ||||||||                             
ttaggtaatagatgttggtagcgtgaagttatggtcttttgaggttgttcttattcattttgcttattatttatttatt-tactttgtttccgtggagaagGTTGTGACGGGTACCAAATCAGCAAACACTGAACCTGTTAAGATTTCGCTTAAGGATTGCTTAGCATGCAGGTACAACTCTTTCTCCCCCATGCTTTTAA

upper sequence: GLYMA07G39690.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv00s0508g00020.t01 (Vitis vinifera), 3'ss of exon 1
--------------gtattttcatttccttctattcttcggaa--taatcacaatatctttgtcaaacccttcttgctcacatgtaatttctctctag-
               |  |  | |    || |  ||||  ||   |  ||  | |   ||||   |    || ||  |   |  |  ||||  |  ||   ||    |  | || |||    |  |||  |||||||||||| ||||||||||||||||| || ||||||||
ttaggtaatagatgttggtagcgtgaagttatggtcttttgaggttgttcttattcattttgcttattatttatttatt-tactttgtttccgtggagaagGTTGTGACGGGTACCAAATCAGCAAACACTGAACCTGTTAAGATTTCGCTTAAGGATTGCTTAGCATGCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aataatcacaatatctttgtcaaacccttcttgctcacatgtaatttctctctagGTATCAATTGCTAACAAGCAGGTCAACTTTGAACCTGTTAAAATTTCGCTTAAGGATTGTTTGGCATGCAG
                               tgctcac  putative branch site (score: 2)
                                            tttctctct  putative PPT
         aatatcttt  TA-rich tract