Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttgctgcttcgcttcatttcattctccatttcctttcggttacaactcattcttttgtctttgatcgtagACGGAGATGGCCGCATCACTGGAAATGATGCAACCAAATTCTTTGCTCTCTCCAACTTATCTCGCTCTCAACTCAAGCAG

Basic information

species Glycine max
transcript GLYMA07G39450.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151395965|gb|EV265842.1|EV265842
EST:     GAAAGAGCAATTGAAGACTTACCAGGACTGGTTCAACTTAGCCGACTCAG                         ACGGAGATGGCCGCATCACTGGAAATGATGCAACCAAACTCTTTGCTCTCT
genomic: GAAAGAGCAATTGAAGACTTACCAGGACTGGTTCAACTTAGCCGACTCAGgttttgctgc ... ttgatcgtagACGGAGATGGCCGCATCACTGGAAATGATGCAACCAAATTCTTTGCTCTCT
EST: gi|298174570|gb|HO017793.1|HO017793
EST:     GAAAGAGCAATTGAAGACTTACCAGGACTGGTTCAACTTAGCCGACTCAG                         ACGGAGATGGCCGCATCACTGGAAATGATGCAACCAAATTCTTTGCTCTCT
genomic: GAAAGAGCAATTGAAGACTTACCAGGACTGGTTCAACTTAGCCGACTCAGgttttgctgc ... ttgatcgtagACGGAGATGGCCGCATCACTGGAAATGATGCAACCAAATTCTTTGCTCTCT
EST: gi|7146390|gb|AW508312.1|AW508312
EST:     GAAAGAGCAATTGAAGACTTACCAGGACTGGTTCAACTTAGCCGACTCAG                         ACGGAGATGGCCGCATCACTGGAAATGATGCAACCAAATTCTTTGCTCTCT
genomic: GAAAGAGCAATTGAAGACTTACCAGGACTGGTTCAACTTAGCCGACTCAGgttttgctgc ... ttgatcgtagACGGAGATGGCCGCATCACTGGAAATGATGCAACCAAATTCTTTGCTCTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttcattctccatttcctttcggttacaactcattcttttgtctttgatcgtagACGGAGATGGCCGCATCACTGGAAATGATGCAACCAAATTCTTTGCTCTCTCCAACTTATCTCGCTCTCAACTCAAGCAG
                                           ctttgat  putative branch site (score: 5)
                              ctcattcttttgtctt  CT-rich tract
                                 attctttt  TA-rich tract