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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatttagcattttcacttgttaacctcacatcccctaattttgagtaattatttttgtgctagcaaattgcaattgaactttattaatttggatgaatagGAGAACATGGGGAACAGGATGAATGCGATCGCGTTGTGCTTGTTAGTGTCAAGCCTGTTACTTTCTTCGGTGTATTGTGCACCGAATGATGGGCTGCGTA

Basic information

species Glycine max
transcript GLYMA07G39240.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193424677|gb|FK385990.1|FK385990
EST:     CCATTCTCATTCATTCTTCACAGCC                         GAGAACATGGGGAACAGGATGAATGCGATCGCGTTGTGCTTGTTAGTGTCA
genomic: CCATTCTCATTCATTCTTCACAGCCgtgagtgtct ... ggatgaatagGAGAACATGGGGAACAGGATGAATGCGATCGCGTTGTGCTTGTTAGTGTCA
EST: gi|208143807|gb|GD942908.1|GD942908
EST:     TTCTCATTCATTCTTCACAGCC                         GAGAACATGGGGAACAGGATGAATGCGATCGCGTTGTGCTTGTTAGTGTCA
genomic: TTCTCATTCATTCTTCACAGCCgtgagtgtct ... ggatgaatagGAGAACATGGGGAACAGGATGAATGCGATCGCGTTGTGCTTGTTAGTGTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taattatttttgtgctagcaaattgcaattgaactttattaatttggatgaatagGAGAACATGGGGAACAGGATGAATGCGATCGCGTTGTGCTTGTTAGTGTCAAGCCTGTTACTTTCTTCGGTGTATTGTGCACCGAATGATGGGCTGCGTA
                                    tattaat  putative branch site (score: 2)
                          aattgaactttattaa  TA-rich tract