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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgtcacgttttttcgaattgtggttcttttgtggaatttgaactgatgttattgttaaagCACGTACGTTGCAACTCTGCCACTAACAGACTCATAACTGCAAAGGACCATGCCTCGGTTCAGATAAACATTGGCCATTTGGATGAGAATGGTATCTATA

Basic information

species Glycine max
transcript GLYMA07G37700.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G37700.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os03g46490.1 (Oryza sativa), 3'ss of exon 2
----gttgtcacgttttttcgaattgtggttcttttgtggaatttgaact--gatgttattgttaaagCACGT-ACGTTG--------CAACTCTGCCACTAACAGACTCATAACTGCAAAGGACCATGCCTCGGTTCAGATAAACATTGGCCATTTGGATGAGAATGGTATCTATA--------------
    |||       || ||    || ||||  | |  |  || | |   |  |||||  || |  | ||  ||   ||||        || |||  |||| |||||  |||| || || ||||||||||||||||| ||||| |||||||| ||| |||||||||||||  | ||                
gtatgtttctgtcattcttgatgttttggtg-tctaattcaactggtgtttagatgtacttttacatgcgtgttgtgttggtttcctgcagCTCGACCACCAACAGGATCATCACCGCCAAGGACCATGCCTCGGTCCAGATCAACATTGGGCATGTGGATGAGAATGGGCTGTACGATGGCCGCTTCACC

upper sequence: GLYMA07G37700.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM5G831474_T01 (Zea mays), 3'ss of exon 1
-----gttgtcacgttttttcgaattgtggttcttt-tgtggaatttgaactgatgttattgttaaagCACGTACGTTGCAACTCTGCCACTAACAGACTCATAACTGCAAAGGACCATGCCTCGGTTCAGATAAACATTGGCCATTTGGATGAGAATGGTATCTATA--------------
      ||| ||   || ||  ||   | |  || |   |||    | |  |  ||||| | || |          ||||| ||  ||||| |||||| |||| ||||| ||||| |||||||| || ||||| ||||||||||| ||||||| ||||||  | ||                
gtacgtttgccatacttgtttaaacctttgccctctgcatggttaattatgttgtgttaatattgagtttttgttcttgcagCTTGGCCACGAACAGAATCATCACTGCCAAGGATCATGCCTCTGTCCAGATCAACATTGGCCACTTGGATGCGAATGGCCTGTACGATGTCACTTCACCA

upper sequence: GLYMA07G37700.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G157300_T01 (Zea mays), 3'ss of exon 1
-----gttgtcacgttttttcg---aattgtggttcttttgtggaatttgaactgatgt--tattgttaaagC-ACGTACGTTGCAACTCTGCCACTAACAGACTCATAACTGCAAAGGACCATGCCTCGGTTCAGATAAACATTGGCCATTTGGATGAGAATGGTATCTATA--------------
      ||| | | |  | | |   || | |   |  | ||     || |   |  |||  ||  ||| |    | || | || || ||| ||||| |||||  |||| ||||| |||||||||||||| || ||||| ||||||||||| ||||||| ||||||  | |||               
gtatgtttgcctcatcctcttgtagaaatatttctgctctgcatggttggtttttgtgtgctaaggttgagtttatgttcttt-cagCTCGGCCACAAACAGGATCATCACTGCCAAGGACCATGCCTCTGTCCAGATCAACATTGGCCACTTGGATGCGAATGGCTTGTATGATGGTCACTTCACA

upper sequence: GLYMA07G37700.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G125300_T02 (Zea mays), 3'ss of exon 2
-----gttgtcacgttttttcg---aattgtggttcttttgtggaatttgaactgatgt----tattgttaaagC-ACGTACGTTGCAACTCTGCCACTAACAGACTCATAACTGCAAAGGACCATGCCTCGGTTCAGATAAACATTGGCCATTTGGATGAGAATGGTATCTATA--------------
      ||| | | |  | | |   || | |   |  | ||     || |   || |||    ||  ||| |    | || | || || ||| ||||| |||||  |||| ||||| |||||||||||||| || ||||| ||||||||||| ||||||| ||||||  | |||               
gtacgtttgcctcatcctcttgtagaaatatttctgctctgcatggttggttttgttgtgtgctaaggttgagtttatgttcttt-cagCTCGGCCACAAACAGGATCATCACTGCCAAGGACCATGCCTCTGTCCAGATCAACATTGGCCACTTGGATGCGAATGGCCTGTATGATGGTCACTTCACA

upper sequence: GLYMA07G37700.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G134109_T01 (Zea mays), 3'ss of exon 2
--------gttgt-cacgttttttcgaattgtggttcttt-tgtggaatttgaactgatgttattgttaaagCACGTACGTTGCAACTCTGCCACTAACAGACTCATAACTGCAAAGGACCATGCCTCGGTTCAGATAAACATTGGCCATTTGGATGAGAATGGTATCTATA--------------
        | ||| |    || ||  ||   | |  || |   |||    | |  |  ||||| | || |    |     ||||| ||| ||||| || ||  |||| ||||| ||||| |||||||| || ||||| ||||||||||| ||||||| ||||||  | ||                
gtacgtttgctgtactttcttgtttaaacctttgccctctgcatggttaattatgttgtgttaatattgagtttctgttcttgcagCTCGGCCACGAATAGGATCATCACTGCCAAGGATCATGCCTCTGTCCAGATCAACATTGGCCACTTGGATGCGAATGGCCTGTACGATGGTCACTTCACC

upper sequence: GLYMA07G37700.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv14s0060g02110.t01 (Vitis vinifera), 3'ss of exon 2
----gttgtcacgttttttcgaattgtggttcttttgtggaatttgaactgatgtt---attgttaaagCACGTACGTTGCAACTCTGCCACTAACAGACTCATAACTGCAAAGGACCATGCCTCGGTTCAGATAAACATTGGCCATTTGGATGAGAATGGTATCTATA--------------
    | ||     |||| | || | |   || ||| | |   |  |   ||    |   |||| |    |   ||| ||||| |||||||||||| || ||||| ||| ||||||| ||||| || || ||||| |||||||| ||||| ||||||| ||| |  || |              
gtatgctgctttattttattgattagccattttttagcgtgttgggtcatggaactccgattgatttttcttatac-ttgcagCTCTGCCACTAATAGGCTCATCACTTCAAAGGATCATGCATCAGTCCAGATTAACATTGGGCATTTAGATGAGAGTGGAACTTACACCGGTCAATTTACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgttttttcgaattgtggttcttttgtggaatttgaactgatgttattgttaaagCACGTACGTTGCAACTCTGCCACTAACAGACTCATAACTGCAAAGGACCATGCCTCGGTTCAGATAAACATTGGCCATTTGGATGAGAATGGTATCTATA
                                   aactgat  putative branch site (score: 3)
                                        atgttattgttaaa  TA-rich tract