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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgctctgttcaatttctctaacacgttcttacttttttgctgctctcttcattgtcttacattgtgtgcattgaattgcagAGATGGCTAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCCACAAGAATGGCATCAAAAAGCCAAAGAGGCACCGCCACACTTCCACCAA

Basic information

species Glycine max
transcript GLYMA07G37060.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G37060.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os01g19840.1 (Oryza sativa), 3'ss of exon 1
--------------------------------gttcgct--ctgttcaatttctctaacacgttcttacttttttgctgctc--tcttcattgtct-tacattgtgtgcattgaatt--gcagAGATGGCTAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCCACAAGAATGGCATCAAAAAGCCAAAGAGGCACCGCCACACTTCCACCAA
                                 |||| |  || ||  |||| || | |    | ||  |    || | |    | ||  | || | | | | || |     | |||  |  |||||||| ||||||||||||||||| || ||||||||||| |||||||| |||||||| || ||||| ||||| ||| | |||||||| |          
gtaaccgacgattcctccatttccatcgcctcattcgatgtctctttgatttatcgatcttcgttttcttcccctgattcctgatttttttcgtttgttcgtcgtctttgaagGATTCGGGGGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTACAAGGCGCACAAGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGA----------

upper sequence: GLYMA07G37060.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G009894_T01 (Zea mays), 3'ss of exon 1
------------------gttcgctctgttca----atttctctaacacgttcttacttt---tttgctgctctcttcatt---gtcttacattgtgtgcattgaattgca-gAGATGGCTAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCCACAAGAATGGCATCAAAAAGCCAAAGAGGCACCGCCACACTTCCACCAA
                  | ||| |||||||     |  | | |    |||  | ||  |   |   |  | | |||  |    |||     |||| ||||  ||   | | |||||||| ||||||||||||||||| || ||||||||||| |||||||| |||||||| |||||||| ||||| ||| | ||||| ||            
gtaactctccggcactccgctcgatctgttcctactagatgtgttgttcgtcttcaccgtcaatccacctcccccttactctgagtcgccttttgtttgcagGGATCCGGAAGAGATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTACAAGGCGCACAAGAACGGCATCAAGAAGCCCAAGCGCCACCGGCAG-----------

upper sequence: GLYMA07G37060.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G147791_T01 (Zea mays), 3'ss of exon 1
------------------gttcgctctgttc--aatttctctaaca--cgttcttactttt---ttgctgctctcttcattgt----cttacattgtgtgcattgaattgca-gAGATGGCTAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCCACAAGAATGGCATCAAAAAGCCAAAGAGGCACCGCCACACTTCCACCAA
                  | ||| |||  ||  |||   | | |    |||  | ||  |       |  |||   | | | |    |  || ||||  |||   |   | | || ||||| ||||||||||||||||| || ||||||||||| | |||||| |||||||| ||||| || || || ||| | ||||||||            
gtaattctcaggcaccccgctcgatctcatcctaatcggtgtgattttcgtcttcaccgtcaacccacccctccacttactctgattcgcactttgttggcagGCATCCGGAAGAAATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTTCAAGGCGCACAAGAACGGCATTAAGAAACCCAAGCGCCACCGCCAG-----------

upper sequence: GLYMA07G37060.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G147791_T02 (Zea mays), 3'ss of exon 1
gttcgctctgttcaatttctctaacacgttcttacttttttgct-gctctcttcattgtcttacattgtgtgcattgaattgcagAGATGGCTAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCCACAAGAATGGCATCAAAAAGCCAAAGAGGCACCGCCACACTTCCACCAA
      | || |     |||  | |     |  ||   |   ||  ||||  |       ||   | |   ||||      | ||| ||||| ||||||||||||||||| || ||||||||||| | |||||| |||||||| ||||| || || || ||| | ||||||||            
-----gtgtgattttcgtcttcaccgtcaacccacccctccacttactctgattcgcactttgt-tggcagGCATCCG---GAAGAAATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTTCAAGGCGCACAAGAACGGCATTAAGAAACCCAAGCGCCACCGCCAG-----------

upper sequence: GLYMA07G37060.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G147791_T03 (Zea mays), 3'ss of exon 1
-------gttcgctctgttc--aatttctctaac--acgttcttactttt---ttgctgctctcttcattgt--cttacattgtgtgcattgaatt---gcagAGATGGCTAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCCACAAGAATGGCATCAAAAAGCCAAAGAGGCACCGCCACACTTCCACCAA
       | ||| |||  ||  |||   | | |    |||  | ||  |       |  |||   | | | |   |  || | |||     |   |   | ||| ||||| ||||||||||||||||| || ||||||||||| | |||||| |||||||| ||||| || || || ||| | ||||||||            
gcaccccgctcgatctcatcctaatcggtgtgattttcgtcttcaccgtcaacccacccctccacttactctgattcgcactttgttggcagGCATCCGGAAGAAATGGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTTCAAGGCGCACAAGAACGGCATTAAGAAACCCAAGCGCCACCGCCAG-----------

upper sequence: GLYMA07G37060.1 (Glycine max), 3'ss of exon 1
lower sequence: PP1S58_102V6.2 (Physcomitrella patens), 3'ss of exon 1
----------gttcgctctgttcaatttc-------tctaacacgttcttact-----tttttgctgctctcttcattgtcttacattgtgtgcattgaattgcag-
          | |   |  ||| |||||        |||     |||   | |     || |   || |  || |||||  ||   ||   | |  |  || ||||   ||||||| ||||| ||||| |||||||| ||||||||||||||||||  |||||||||||| ||||| |||   ||||  |||    |  | ||      
ttagttcggagatgatttagttgaattttggaggattctgggtagttagcattggagcttctccatgtttcctgcattgagtt---tttcattcgctcgatagCAGGTAAGATGGCCAAGTCCAAGAATCACACCGCACACAACCAGTCCTACAAGAACCACAAGAATGGTATCAAGAAGGTTAAGAAACACAAATATGCCTC------

upper sequence: GLYMA07G37060.1 (Glycine max), 3'ss of exon 1
lower sequence: PP1S28_307V6.1 (Physcomitrella patens), 3'ss of exon 1
----------------gttcgctctgttcaatttctctaacacgttcttacttt-tttgctgctctcttcattgt-cttacattgtgtgcattgaa--ttgcagAGATGGCTAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCCACAAGAATGGCATCAAAAAGCCAAAGAGGCACCGCCACACTTCCACCAA
                | |||  |||  | || | | | |   | |     | | ||| |   ||  ||  |||| ||||  |  ||||  ||| |    |     ||||| || || ||||| || ||||||||||||||||||||||||  |||||||||||| ||||| |||   |||| ||||    |  | || |    
tcaggatttgaaacaggctcga-ctgcgccatgtgtttgaagtggtggggttgtgtttacgtttcgttttgttgtacttatgtcctgtgggttggaagcagGTAGAATGGCGAAATCTAAGAATCATACCGCTCACAACCAGTCCTACAAGAACCACAAGAATGGTATCAAGAAGGTGAAGAAGCACAAATATGCCTCAAG---

upper sequence: GLYMA07G37060.1 (Glycine max), 3'ss of exon 1
lower sequence: PP1S58_102V6.1 (Physcomitrella patens), 3'ss of exon 1
-------gttcgctctgttcaatttc-------tctaacacgttcttact-----tttttgctgctctcttcattgtcttacattgtgtgcattgaattgcag-
       | |   |  ||| |||||        |||     |||   | |     || |   || |  || |||||  ||   ||   | |  |  || ||||   ||||||| ||||| ||||| |||||||| ||||||||||||||||||  |||||||||||| ||||| |||   ||||  |||    |  | || |    
gttcggagatgatttagttgaattttggaggattctgggtagttagcattggagcttctccatgtttcctgcattgagtt---tttcattcgctcgatagcagGTAAGATGGCCAAGTCCAAGAATCACACCGCACACAACCAGTCCTACAAGAACCACAAGAATGGTATCAAGAAGGTTAAGAAACACAAATATGCCTCAAG---

upper sequence: GLYMA07G37060.1 (Glycine max), 3'ss of exon 1
lower sequence: PP1S79_253V6.2 (Physcomitrella patens), 3'ss of exon 1
--------------gttcgctctgttcaatttctctaac--acgttcttacttttttgctgctctcttcattgtcttacattgtgtgcattgaattgcag-
              ||  |     |       |    ||    ||| ||  |  | ||  | | |||| |||| || |  ||       ||   | ||||   ||||||| ||||| ||||||||||| || ||||||||||||||||||  |||||||||||| ||||| |||   |||| |||     |||  || |    
agcaatagtttctagtgtggcagctgtggccccagggactggtgttgttgttcctctgtcggtgtcttgattgactgatttttctgtggttttgtagcagGTAAGATGGCGAAGTCCAAGAACCACACTGCGCACAACCAGTCCTACAAGAACCACAAGAATGGTATCAAGAAGGTTAAGAAGCATAAATACATCTCAAG---

upper sequence: GLYMA07G37060.1 (Glycine max), 3'ss of exon 1
lower sequence: PP1S79_253V6.1 (Physcomitrella patens), 3'ss of exon 1
-----------------gttcgctctgttcaatttctctaac--acgttcttacttttttgctgctctcttcattgtcttacattgtgtgcattgaattgcag-
                 ||  |     |       |    ||    ||| ||  |  | ||  | | |||| |||| || |  ||       ||   | ||||   ||||||| ||||| ||||||||||| || ||||||||||||||||||  |||||||||||| ||||| |||   |||| |||     |||  ||      
tgcagcaatagtttctagtgtggcagctgtggccccagggactggtgttgttgttcctctgtcggtgtcttgattgactgatttttctgtggttttgtagCAGGTAAGATGGCGAAGTCCAAGAACCACACTGCGCACAACCAGTCCTACAAGAACCACAAGAATGGTATCAAGAAGGTTAAGAAGCATAAATACATCTC------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6963731|gb|AW432424.1|AW432424
EST:     AGAAAACCTTAGCCCAACCGGATCTTCACGATTAGG                         AGATGGCTAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCC
genomic: AGAAAACCTTAGCCCAACCGGATCTTCACGATTAGGgttcgctctg ... tgaattgcagAGATGGCTAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCC
EST: gi|6071685|gb|AW101072.1|AW101072
EST:     CCGGATCTTCACGATTAGG                         AGATGGCTAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCC
genomic: CCGGATCTTCACGATTAGGgttcgctctg ... tgaattgcagAGATGGCTAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCC
EST: gi|12688323|gb|BG154659.1|BG154659
EST:     GAAAACCTTAGCCCAACCGGATCTTCACGATTAGG                         AGATGGCTAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCC
genomic: GAAAACCTTAGCCCAACCGGATCTTCACGATTAGGgttcgctctg ... tgaattgcagAGATGGCTAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCC
EST: gi|13252199|gb|BG363102.1|BG363102
EST:     AGAAAACCTTAGCCCAACCGGATCTTCACGATTAGG                         AGATGGCTAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCC
genomic: AGAAAACCTTAGCCCAACCGGATCTTCACGATTAGGgttcgctctg ... tgaattgcagAGATGGCTAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCC
EST: gi|8403910|gb|BE059544.1|BE059544
EST:     AGAAAACCTTAGCCCAACCGGATCTTCACGATTAGG                         AGATGGCTAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCC
genomic: AGAAAACCTTAGCCCAACCGGATCTTCACGATTAGGgttcgctctg ... tgaattgcagAGATGGCTAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCC
EST: gi|15813197|gb|BI785472.1|BI785472
EST:     CTTAGCCCAACCGGATCTTCACGATTAGG                         AGATGGCTAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCC
genomic: CTTAGCCCAACCGGATCTTCACGATTAGGgttcgctctg ... tgaattgcagAGATGGCTAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCC
EST: gi|298163519|gb|HO012252.1|HO012252
EST:     GTTCCGCAGAAAACCTTAGCCCAACCGGATCTTCACGATTAGG                         AGATGGCTAAGTCGAAGAACCGCACCGCTCACAACCAGTCCTACAAGGCCC
genomic: GTTCCGCAGAAAACCTTAGCCCAACCGGATCTTCACGATTAGGgttcgctctg ... tgaattgcagAGATGGCTAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCC
EST: gi|31308650|gb|CD393853.1|CD393853
EST:     GAAAACCTTAGCCCAACCGGATCTTCACGATTAGG                         AGATGGCTAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCC
genomic: GAAAACCTTAGCCCAACCGGATCTTCACGATTAGGgttcgctctg ... tgaattgcagAGATGGCTAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCC
EST: gi|31474566|gb|CD416594.1|CD416594
EST:     GCCCAACCGGATCTTCACGATTAGG                         AGATGGCTAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCC
genomic: GCCCAACCGGATCTTCACGATTAGGgttcgctctg ... tgaattgcagAGATGGCTAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCC
EST: gi|19052942|gb|BM731609.1|BM731609
EST:     GATCTTCACGATTAGG                         AGATGGCTAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCC
genomic: GATCTTCACGATTAGGgttcgctctg ... tgaattgcagAGATGGCTAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCC
EST: gi|14990918|gb|BI316591.1|BI316591
EST:     GAAAACCTTAGCCCAACCGGATCTTCACGATTAGG                         AGATGGCTAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCC
genomic: GAAAACCTTAGCCCAACCGGATCTTCACGATTAGGgttcgctctg ... tgaattgcagAGATGGCTAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCC
EST: gi|254337384|gb|GR849337.1|GR849337
EST:     AAATTCTGTTCCGCAGAAAACCTTAGCCCAACCGGATCTTCACGATTAGG                         AGATGGCTAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCC
genomic: AAATTCTGTTCCGCAGAAAACCTTAGCCCAACCGGATCTTCACGATTAGGgttcgctctg ... tgaattgcagAGATGGCTAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCC
EST: gi|7146994|gb|AW508916.1|AW508916
EST:     CCGGATCTTCACGATGGGG                         AGATGGCTAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCC
genomic: CCGGATCTTCACGATTAGGgttcgctctg ... tgaattgcagAGATGGCTAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCC
EST: gi|192318891|gb|FK006269.1|FK006269
EST:     AAATTCTGTTCCGCAGAAAACCTTAGCCCAACCGGATCTTCACGATTAGG                         AGACGGCTAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCC
genomic: AAATTCTGTTCCGCAGAAAACCTTAGCCCAACCGGATCTTCACGATTAGGgttcgctctg ... tgaattgcagAGATGGCTAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCC
EST: gi|298183977|gb|HO029190.1|HO029190
EST:     CCGCAGAAAACCTTAGCCCAACCGGATCTTCACGATTAGG                         AGATGGCTAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCC
genomic: CCGCAGAAAACCTTAGCCCAACCGGATCTTCACGATTAGGgttcgctctg ... tgaattgcagAGATGGCTAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCC
EST: gi|254346188|gb|GR859801.1|GR859801
EST:     TCTTCACGATTAGG                         AGATGGCTAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCC
genomic: TCTTCACGATTAGGgttcgctctg ... tgaattgcagAGATGGCTAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCC
EST: gi|305377726|gb|HO651957.1|HO651957
EST:     GAAAACCTTAGCCCAACCGGATCTTCACGATTAGG                         AGATGGCTAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCC
genomic: GAAAACCTTAGCCCAACCGGATCTTCACGATTAGGgttcgctctg ... tgaattgcagAGATGGCTAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCC
EST: gi|254325606|gb|GR838487.1|GR838487
EST:     CCGGATCTTCACGATTAGG                         AGATGGCTAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCC
genomic: CCGGATCTTCACGATTAGGgttcgctctg ... tgaattgcagAGATGGCTAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCC
EST: gi|17519029|gb|BM188071.1|BM188071
EST:     CCGGATCTTCACGATTAGG                         AGATGGCTAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCC
genomic: CCGGATCTTCACGATTAGGgttcgctctg ... tgaattgcagAGATGGCTAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCC
EST: gi|31464562|gb|CD406590.1|CD406590
EST:     GGATCTTCACGATTAGG                         AGATGGCTAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCC
genomic: GGATCTTCACGATTAGGgttcgctctg ... tgaattgcagAGATGGCTAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCC
EST: gi|254324085|gb|GR840510.1|GR840510
EST:     AGAAAACCTTAGCCCAACCGGATCTTCACGATTAGG                         AGATGGCTAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCC
genomic: AGAAAACCTTAGCCCAACCGGATCTTCACGATTAGGgttcgctctg ... tgaattgcagAGATGGCTAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCC
EST: gi|8401489|gb|BE057185.1|BE057185
EST:     GAAAACCTTAACCCAACCGGATCTTCACGATTAGG                         AGATGGCTAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCC
genomic: GAAAACCTTAGCCCAACCGGATCTTCACGATTAGGgttcgctctg ... tgaattgcagAGATGGCTAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCC
EST: gi|31466757|gb|CD408785.1|CD408785
EST:     TAGCCCAACCGGATCGTCACGATTAGG                         AGATGGCTAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCC
genomic: TAGCCCAACCGGATCTTCACGATTAGGgttcgctctg ... tgaattgcagAGATGGCTAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCC
EST: gi|10845243|gb|BF068399.1|BF068399
EST:     GAAAACCTTAGCCCAACCGGATCTTCACGATTAGG                         AGATGGCTAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCC
genomic: GAAAACCTTAGCCCAACCGGATCTTCACGATTAGGgttcgctctg ... tgaattgcagAGATGGCTAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCC
EST: gi|151406595|gb|EV276410.1|EV276410
EST:     AAACCTTAGCCCAACCGGATCTTCACGATTAGG                         AGATGGCTAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCC
genomic: AAACCTTAGCCCAACCGGATCTTCACGATTAGGgttcgctctg ... tgaattgcagAGATGGCTAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCC
EST: gi|192318890|gb|FK006268.1|FK006268
EST:     AAATTCTGTTCCGCAGAAAACCTTAGCCCAACCGGATCTTCACGATTAGG                         AGACGGCTAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCC
genomic: AAATTCTGTTCCGCAGAAAACCTTAGCCCAACCGGATCTTCACGATTAGGgttcgctctg ... tgaattgcagAGATGGCTAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCC
EST: gi|21255598|gb|BQ452486.1|BQ452486
EST:     GGATCTTCACGATTAGG                         AGATGGCTAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCC
genomic: GGATCTTCACGATTAGGgttcgctctg ... tgaattgcagAGATGGCTAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCC
EST: gi|6846397|gb|AW348687.1|AW348687
EST:     GAAAACCTTAGCCCAACCGGATCTTCACGATTAGG                         AGATGGCTAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCC
genomic: GAAAACCTTAGCCCAACCGGATCTTCACGATTAGGgttcgctctg ... tgaattgcagAGATGGCTAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCC
EST: gi|17963961|gb|BM270704.1|BM270704
EST:     CGGATCTTCACGATTAGG                         AGATGGCTAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCC
genomic: CGGATCTTCACGATTAGGgttcgctctg ... tgaattgcagAGATGGCTAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttacttttttgctgctctcttcattgtcttacattgtgtgcattgaattgcagAGATGGCTAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCCACAAGAATGGCATCAAAAAGCCAAAGAGGCACCGCCACACTTCCACCAA
                                           attgaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttcgctctgttcaatttctctaacacgttcttacttttttgctgctctcttcattgtcttacattgtgtgcattgaattgcagAGATGGCTAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCCACAAGAATGGCATCAAAAAGCCAAAGAGGCACCGCCACACTTCCACCAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG