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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aattgatagccgttaatgaatattgaatgctgactgcgggatagagtaagttgagtatcacatttttgtgagagaagttttattaacggtatgattgcagGGTTTGAAAACAGCTATTGTGGAAGGAGATGTGGTGGGAGGGACATGTGTGAACCGAGGCTGTGTTCCTTCCAAAGCTCTTTTGGCCGTGAGTGGTCGTA

Basic information

species Glycine max
transcript GLYMA07G37050.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G37050.2 (Glycine max), 3'ss of exon 1
lower sequence: AT4G16155.1 (Arabidopsis thaliana), 3'ss of exon 1
aattgata-gccgttaatgaatattgaatgctgactgcgggatagagtaa-gttgagtatcacatttttgtgaga--gaagttttattaacggtatgattgcagGGTTTGAAAACAGCTATTGTGGAAGGAGATGTGGTGGGAGGGACATGTGTGAACCGAGGCTGTGTTCCTTCCAAAGCTCTTTTGGCCGTGAGTGGTCGTA
  |  ||| |||  |  || |     | |    | | | | ||    | | | |    || |  |  | | | ||  |  |||||  ||||| | |      ||||  | ||||| |||||  | ||||||||||| || ||||| || || || ||| |||||||||| ||||||||||||||  | || || |||||| | |
cttcaatatgccaattttggaatcgtactagctattactgtatttctttacggtattcatgatctcatcgagtgattgttgttttgataacgttgta----tagGGACTCAAAACTGCTATCATTGAAGGAGATGTTGTTGGAGGTACTTGCGTTAACAGAGGCTGTGTGCCTTCCAAAGCTCTACTTGCTGTTAGTGGTAGGA

upper sequence: GLYMA07G37050.2 (Glycine max), 3'ss of exon 1
lower sequence: AT3G16950.1 (Arabidopsis thaliana), 3'ss of exon 1
aattgatagccgttaatgaatattgaatg--ctgactgcgggatagagtaagttgagtatcacatttttgtgagagaagttttattaacggtatgattgc-agGGTTTGAAAACAGCTATTGTGGAAGGAGATGTGGTGGGAGGGACATGTGTGAACCGAGGCTGTGTTCCTTCCAAAGCTCTTTTGGCCGTGAGTGGTCGTA
            || | |  | ||  ||   |||| |    || ||   ||| |  |     |    || | |  |||   ||  | |   | |   ||  ||||  | |||||||| ||| | ||||||||||| || |||||||| ||||| ||| |||| ||||| ||||| ||||||||| | || || |||||||| |
----------gtttgaagtttcttatataacctgatttgatgaaagtaaaagatttgctctgc----ttattatggaaacattggtgattttgtttgtgttagGGACTTAAAACAGCCATTATTGAAGGAGATGTTGTTGGAGGGACTTGTGTTAACAGAGGATGTGTGCCTTCTAAAGCTCTTCTTGCTGTTAGTGGTCGAA

upper sequence: GLYMA07G37050.2 (Glycine max), 3'ss of exon 1
lower sequence: PP1S35_94V6.1 (Physcomitrella patens), 3'ss of exon 1
------------------------------------aattgatagccgttaatgaatattgaatgctgactgcgggatagagtaagttgagtatcacatttttgtgagagaagttttattaacggtatgattgcagGGTTTGAAAACAGCTATTGTGGAAGGAGATGTGGTGGGAGGGACATGTGTGAACCGAGGCTGTGTTCCTTCCAAAGCTCTTTTGGCCGTGAGTGGTCGTA
                                       ||     | ||     | |||   || || |||| | |  || |       ||||   |  |  | ||  |  |  | ||   |  |   | || |||| ||||| || || ||  | || |||||||| ||||| || || || ||||||||||| ||||| ||||| |||||||| ||||| |||||||| || |
gtgcgctggtttgatccagactttgctctgtttgtggggtgcctctcattgtgtcacattccttgttg-ctgctgcac-gaatggacgtggtattcaacgt--gggattggtgcatgatgggcaatgacaatgtagGGGTTGAAGACGGCAATCATCGAGGGAGATGTAGTGGGCGGAACTTGCGTGAACCGAGGGTGTGTACCTTCGAAAGCTCTCTTGGCTGTGAGTGGACGGA

upper sequence: GLYMA07G37050.2 (Glycine max), 3'ss of exon 1
lower sequence: EFJ16882 (Selaginella moellendorffii), 3'ss of exon 1
aattgatagccgttaatgaatattgaatgctgactgcgggatagagtaagttgagtatcacatttttgtgagagaagttttattaacggtatgattgcagGGTTTGAAAACAGCTATTGTGGAAGGAGATGTGGTGGGAGGGACATGTGTGAACCGAGGCTGTGTTCCTTCCAAAGCTCTTTTGGCCGTGAGTGGTCGTA
    |  ||    |  |   | ||     ||  |  |||     ||| | |||                ||||||  | ||  |    ||       |||||  | || || || ||  | |||| |||  | || |||||||| |||||||| ||||| || |||||||||||||| ||  ||||||||||||| || |
----gtaagttccttctttttcttcgcgtctagcctcggagagaagtgaattg---------------cgagagatctctttctcttcgtc------cagGGGCTCAAGACCGCCATCATCGAAGCAGACATTGTTGGAGGGACTTGTGTGAATCGAGGGTGCGTTCCTTCCAAAGCGCTCCTGGCCGTGAGTGGACGCA

upper sequence: GLYMA07G37050.2 (Glycine max), 3'ss of exon 1
lower sequence: EFJ06739 (Selaginella moellendorffii), 3'ss of exon 1
aattgatagccgttaatgaatattgaatgctgactgcgggatagagtaagttgagtatcacatttttgtgagagaagttttattaacggtatgattgcagGGTTTGAAAACAGCTATTGTGGAAGGAGATGTGGTGGGAGGGACATGTGTGAACCGAGGCTGTGTTCCTTCCAAAGCTCTTTTGGCCGTGAGTGGTCGTA
                 | |  ||   |  |  || || |         |  ||| |    |   ||| ||||||  | ||  |    ||       |||||  | || || || ||  | |||| |||  | || |||||||| |||||||| ||||| || |||||||||||||| ||  ||||||||||||| || |
-----------------gtaagttccttcttttcttcgcgtctagcctcggagagaagtgaa---ttgcgagagatctctttctcttcgtc------cagGGGCTCAAGACCGCCATCATCGAAGCAGACATTGTTGGAGGGACTTGTGTGAATCGAGGATGCGTTCCTTCCAAAGCGCTCCTGGCCGTGAGTGGACGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaagttgagtatcacatttttgtgagagaagttttattaacggtatgattgcagGGTTTGAAAACAGCTATTGTGGAAGGAGATGTGGTGGGAGGGACATGTGTGAACCGAGGCTGTGTTCCTTCCAAAGCTCTTTTGGCCGTGAGTGGTCGTA
                                   tattaac  putative branch site (score: 1)
                           agaagttttattaa  TA-rich tract