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gttcctctctctctctctctctctctctctctgaatttgtaaaatctgtatttcgttttctcccttaattgttagtttttatgataataagagattagaatattgcggtgtttcatgaatattttggttttgcggtgcagGGAGAGTGAACTTGATTGGGGAGCATATTGATTATGAAGGTTATTCGGTGCTGCCTATGGCAATTCGGCAAGATACGATCGTGGCGATTCGGAAAAATGA
species | Glycine max |
transcript | GLYMA07G36610.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATTCATCGATATCTTCGGCCATCATCCTCAAATCTTTGCTCGCTCACCCG GGAGAGTGAACTTGATTGGGGAGCATATTGATTATGAAGGTTATTCGGTGCEST: gi|6070813|gb|AW100200.1|AW100200
genomic: ATTCATCGATATCTTCGGCCATCATCCTCAAATCTTTGCTCGCTCACCCGgttcctctct ... tgcggtgcagGGAGAGTGAACTTGATTGGGGAGCATATTGATTATGAAGGTTATTCGGTGC
EST: ATTCATCGATATCTTCGGCCATCATCCTCAAATCTTTGCTCGCTCACCCG GGAGAGTGAACTTGATTGGGGAGCATATTGATTATGAAGGTTATTCGGTGCEST: gi|213589192|gb|DB957724.1|DB957724
genomic: ATTCATCGATATCTTCGGCCATCATCCTCAAATCTTTGCTCGCTCACCCGgttcctctct ... tgcggtgcagGGAGAGTGAACTTGATTGGGGAGCATATTGATTATGAAGGTTATTCGGTGC
EST: ATTCATCGATATCTTCGGCCATCATCCTCAAATCTTTGCTCGCTCACCCG GGAGAGTGAACTTGATTGGGGAGCATATTGATTATGAAGGTTATTCGGTGCEST: gi|19348464|gb|BM892996.1|BM892996
genomic: ATTCATCGATATCTTCGGCCATCATCCTCAAATCTTTGCTCGCTCACCCGgttcctctct ... tgcggtgcagGGAGAGTGAACTTGATTGGGGAGCATATTGATTATGAAGGTTATTCGGTGC
EST: ATTCATCGATATCTTCGGCCATCATCCTCAAATCTTTGCTCGCTCACCCG GGAGAGTGAACTTGATTGGGGAGCATATTGATTATGAAGGTTATTCGGTGCEST: gi|213603198|gb|DB960461.1|DB960461
genomic: ATTCATCGATATCTTCGGCCATCATCCTCAAATCTTTGCTCGCTCACCCGgttcctctct ... tgcggtgcagGGAGAGTGAACTTGATTGGGGAGCATATTGATTATGAAGGTTATTCGGTGC
EST: ATTCATCGATATCTTCGGCCATCATCCTCAAATCTTTGCTCGCTCACCCG GGAGAGTGAACTTGATTGGGGAGCATATTGATTATGAAGGTTATTCGGTGC
genomic: ATTCATCGATATCTTCGGCCATCATCCTCAAATCTTTGCTCGCTCACCCGgttcctctct ... tgcggtgcagGGAGAGTGAACTTGATTGGGGAGCATATTGATTATGAAGGTTATTCGGTGC
aataagagattagaatattgcggtgtttcatgaatattttggttttgcggtgcagGGAGAGTGAACTTGATTGGGGAGCATATTGATTATGAAGGTTATTCGGTGCTGCCTATGGCAATTCGGCAAGATACGATCGTGGCGATTCGGAAAAATGA
tttcatgaatatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcctctctctctctctctctctctctctctgaatttgtaaaatctgtatttcgttttctcccttaattgttagtttttatgataataagagattagaatattgcggtgtttcatgaatattttggttttgcggtgcagGGAGAGTGAACTTGATTGGGGAGCATATTGATTATGAAGGTTATTCGGTGCTGCCTATGGCAATTCGGCAAGATACGATCGTGGCGATTCGGAAAAATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA