1 5' 3' | 2 5' 3' |
...attgcattatcatactctctaattttgtaactttggctacatgattaactataaatagtaaagtttcatatatatatgaatctttcttcttctattgcagGGTTTCAAGAAGGTAGTTGCTGACAGGTGGGAGTTTGCAAATGAGTACTTCAGAAAAGGAGCTAAGCACCTTTTGTGTGAAATCCACAGGAGAAAAGCAC
species | Glycine max |
transcript | GLYMA07G36370.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATTTCAAACACAACAACTTCTCAAGCTTTGTTAGGCAACTCAACACCTAT GGTTTCGAGAAGGTAGTTGCTGACAGGTGGGAGTTTGCAAATGAGTACTTCEST: gi|298163416|gb|HO012149.1|HO012149
genomic: ATTTCAAACACAACAACTTCTCAAGCTTTGTTAGGCAACTCAACACCTATgtaagcatcc ... tctattgcagGGTTTCAAGAAGGTAGTTGCTGACAGGTGGGAGTTTGCAAATGAGTACTTC
EST: ATTTCAAACACGACAACTTCTCAAGCTTTGTTAGGCAACTCAACACCTAT GGTTTCAAGAAGGTAGTTGCTGACAGGTGGGAGTTTGCAAATGAGTACTTCEST: gi|298188481|gb|HO035174.1|HO035174
genomic: ATTTCAAACACAACAACTTCTCAAGCTTTGTTAGGCAACTCAACACCTATgtaagcatcc ... tctattgcagGGTTTCAAGAAGGTAGTTGCTGACAGGTGGGAGTTTGCAAATGAGTACTTC
EST: ATTTCAAACACAACAACTTCTCAAGCTTTGTTAGGCAACTCAACACCTAT GGTTTCAAGAAGGTAGTTGCTGACAGGTGGGAGTTTGCAAATGAGTACTTC
genomic: ATTTCAAACACAACAACTTCTCAAGCTTTGTTAGGCAACTCAACACCTATgtaagcatcc ... tctattgcagGGTTTCAAGAAGGTAGTTGCTGACAGGTGGGAGTTTGCAAATGAGTACTTC
taactataaatagtaaagtttcatatatatatgaatctttcttcttctattgcagGGTTTCAAGAAGGTAGTTGCTGACAGGTGGGAGTTTGCAAATGAGTACTTCAGAAAAGGAGCTAAGCACCTTTTGTGTGAAATCCACAGGAGAAAAGCAC
gattaac putative branch site (score: 2)
tctttcttcttctatt putative PPT
ataaatagtaaagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attgcattatcatactctctaattttgtaactttggctacatgattaactataaatagtaaagtttcatatatatatgaatctttcttcttctattgcagGGTTTCAAGAAGGTAGTTGCTGACAGGTGGGAGTTTGCAAATGAGTACTTCAGAAAAGGAGCTAAGCACCTTTTGTGTGAAATCCACAGGAGAAAAGCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- tgcatta
- - - - - catactc
- - - - - - - - - - - - - - - - -tggctac