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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgtgttggtattgcttcttggaccatgtggaccagtttttaaaaacttccatacaattaagattatctttcattttatgtgactatttccattgctgtagGGGCCTGAGATTCGAACTGGGTTTCTCAAGGACAGTAAGCCTATCCAACTGAAACAAGGTAATGAAATAACCATTTCCACTGACTATGACCTAAAGGGTG

Basic information

species Glycine max
transcript GLYMA07G35110.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G35110.1 (Glycine max), 3'ss of exon 1
lower sequence: AT4G26390.1 (Arabidopsis thaliana), 3'ss of exon 1
tgtgttggtattgcttcttggaccatg-tggacca----gtttttaaaaacttccatacaattaagattatctttcattttatgtgactatttccattgctgtagGGGCCTGAGATTCGAACTGGGTTTCTCAAGGACAGTAAGCCTATCCAACTGAAACAAGGTAATGAAATAACCATTTCCACTGACTATGACCTAAAGGGTG
  | ||| || |  |     || | || | ||       |||||     ||     |    |    || ||  |     | || |   |||||   | ||   |||| || ||||||||||| |||||  | |||||  | || |||||||| || ||||||||  | ||||| |||||||| |||||||||||| | |||||||
--tattgctaataatctcatgaacgtgatagatttatatgttttgggggacccttttggtttctgaataattatgggaatgatttttgtatttgtctggc---agGGACCAGAGATTCGAACCGGGTTCTTAAAGGATGGGAAACCTATCCAGCTCAAACAAGGCCAAGAAATCACCATTTCAACTGACTATGACTTGAAGGGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193567157|gb|FK526910.1|FK526910
EST:     CCGCCATGGAGAACACCGGTATTCTCTGCGTCGTCATGCTCGACACCAAG                         GGGCCTGAGATTCGAACTGGGTTTCTCAAGGACAGTAAGCCTATCCAACTG
genomic: CCGCCATGGAGAACACCGGTATTCTCTGCGCCGTCATGCTCGACACCAAGgcacgcccca ... attgctgtagGGGCCTGAGATTCGAACTGGGTTTCTCAAGGACAGTAAGCCTATCCAACTG
EST: gi|209698021|gb|BW675639.1|BW675639
EST:     CCGCCATGGAGAACACCGGTATTCTCTGCGCCGTCATGCTCGACACCAAG                         GGGCCTGAGATTCGAACTGGGTTTCTCAAGGACAGTAAGCCTATCCAACTG
genomic: CCGCCATGGAGAACACCGGTATTCTCTGCGCCGTCATGCTCGACACCAAGgcacgcccca ... attgctgtagGGGCCTGAGATTCGAACTGGGTTTCTCAAGGACAGTAAGCCTATCCAACTG
EST: gi|209705060|gb|BW653309.1|BW653309
EST:     CCGCCATGGAGAACACCGGTATTCTCTGCGCCGTCATGCTCGACACCAAG                         GGGCCTGAGATTCGAACTGGGTTTCTCAAGGACAGTAAGCCTATCCAACTG
genomic: CCGCCATGGAGAACACCGGTATTCTCTGCGCCGTCATGCTCGACACCAAGgcacgcccca ... attgctgtagGGGCCTGAGATTCGAACTGGGTTTCTCAAGGACAGTAAGCCTATCCAACTG
EST: gi|209727406|gb|BW669859.1|BW669859
EST:     CCGCCATGGAGAACACCGGTATTCTCTGCGCCGTCATGCTCGACACCAAG                         GGGCCTGAGATTCGAACTGGGTTTCTCAAGGACAGTAAGCCTATCCAACTG
genomic: CCGCCATGGAGAACACCGGTATTCTCTGCGCCGTCATGCTCGACACCAAGgcacgcccca ... attgctgtagGGGCCTGAGATTCGAACTGGGTTTCTCAAGGACAGTAAGCCTATCCAACTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttccatacaattaagattatctttcattttatgtgactatttccattgctgtagGGGCCTGAGATTCGAACTGGGTTTCTCAAGGACAGTAAGCCTATCCAACTGAAACAAGGTAATGAAATAACCATTTCCACTGACTATGACCTAAAGGGTG
                                        tttccatt  CT-rich tract
     atacaattaagattat  TA-rich tract