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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctattccatttcgaatctctctctctctcacacaattttcattcagaagcaattttgttttgttctatgccttttcgatttcactgttattatgtcgctcggagaagcgcgattagaatcgcgtttaggttagttaggttactgtctcaattacgaagagtgttgtactaagctcgaaattcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAG

Basic information

species Glycine max
transcript GLYMA07G32960.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298183243|gb|HO028456.1|HO028456
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCA
EST: gi|298172471|gb|HO019511.1|HO019511
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGGGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCA
EST: gi|193558801|gb|FK510798.1|FK510798
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCA
EST: gi|298172644|gb|HO019684.1|HO019684
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCA
EST: gi|298197208|gb|HO041951.1|HO041951
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAAACTCCAACGATGCCA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCA
EST: gi|298177783|gb|HO027336.1|HO027336
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCA
EST: gi|298188030|gb|HO031987.1|HO031987
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAACACTCCAACGATGCCA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCA
EST: gi|208340857|gb|GE137419.1|GE137419
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aggttactgtctcaattacgaagagtgttgtactaagctcgaaattcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAG
           tcaatta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtctattccatttcgaatctctctctctctcacacaattttcattcagaagcaattttgttttgttctatgccttttcgatttcactgttattatgtcgctcggagaagcgcgattagaatcgcgtttaggttagttaggttactgtctcaattacgaagagtgttgtactaagctcgaaattcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CGAAGA