Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagttactctctctctcaacacttcacaaaactctctttgattttccctttttgcgttgatttcgttcttcaattcgaacccaatcaacgttacaatcgcaatcgcatacgaaaaatcacctatcgcaattgcagAAACGTGCGTTCCAATGTCTGATCCTGCCGAAGAGGCTGCTTTCATCGAGAAGCTCTACGAATACGGCGAGCAACTCAACAATGCCAAGGACAAGTCGCA

Basic information

species Glycine max
transcript GLYMA07G32480.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151404452|gb|EV274266.1|EV274266
EST:     TTCCCTACTAATTCAACTCAACAACACTATCGTCTCCATTCACTAGTTAG                         AAACGTGCGTTCCAATGTCTGATCCTGCCGAAGAGGCTGCTTTCATCGAGA
genomic: TTCCCTACTAATTCAACTCAACAACACTATCGTCTCCATTCACTAGTTAGgtcagttact ... gcaattgcagAAACGTGCGTTCCAATGTCTGATCCTGCCGAAGAGGCTGCTTTCATCGAGA
EST: gi|213617036|gb|DB961516.1|DB961516
EST:     TTCCCTACTAATTCAACTCAACAACACTATCGTCTCCATTCACTAGTTAG                         AAACGTGCGTTCCAATGTCTGATCCTGCCGAAGAGGCTGCTTTCATCGAGA
genomic: TTCCCTACTAATTCAACTCAACAACACTATCGTCTCCATTCACTAGTTAGgtcagttact ... gcaattgcagAAACGTGCGTTCCAATGTCTGATCCTGCCGAAGAGGCTGCTTTCATCGAGA
EST: gi|209719847|gb|BW674999.1|BW674999
EST:     TTCCCTACTAATTCAACTCAACAACACTATCGTCTCCATTCACTAGTTAG                         AAACGTGCGTTCCAATGTCTGATCCTGCCGAAGAGGCTGCTTTCATCGAGA
genomic: TTCCCTACTAATTCAACTCAACAACACTATCGTCTCCATTCACTAGTTAGgtcagttact ... gcaattgcagAAACGTGCGTTCCAATGTCTGATCCTGCCGAAGAGGCTGCTTTCATCGAGA
EST: gi|213590208|gb|DB963813.1|DB963813
EST:     TTCCCTACTAATTCAACTCAACAACACTATCGTCTCCATTCACTAGTTAG                         AAACGTGCGTTCCAATGTCTGATCCTGCCGAAGAGGCTGCTTTCATCGAGA
genomic: TTCCCTACTAATTCAACTCAACAACACTATCGTCTCCATTCACTAGTTAGgtcagttact ... gcaattgcagAAACGTGCGTTCCAATGTCTGATCCTGCCGAAGAGGCTGCTTTCATCGAGA
EST: gi|23057710|gb|BU578259.1|BU578259
EST:     TTCCCTACTAATTCAACTCAACAACACTATCGTCTCCATTCACTAGTTAG                         AAACGTGCGTTCCAATGTCTGATCCTGCCGAAGAGGCTGCTTTCATCGAGA
genomic: TTCCCTACTAATTCAACTCAACAACACTATCGTCTCCATTCACTAGTTAGgtcagttact ... gcaattgcagAAACGTGCGTTCCAATGTCTGATCCTGCCGAAGAGGCTGCTTTCATCGAGA
EST: gi|6566471|gb|AW234116.1|AW234116
EST:     TTCCCTACTAATTCAACTCAACAACACTATCGTCTCCATTCACTAGTTAG                         AAACGTGCGTTCCAATGTCTGATCCTGCCGAAGAGGCTGCTTTCATCGAGA
genomic: TTCCCTACTAATTCAACTCAACAACACTATCGTCTCCATTCACTAGTTAGgtcagttact ... gcaattgcagAAACGTGCGTTCCAATGTCTGATCCTGCCGAAGAGGCTGCTTTCATCGAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccaatcaacgttacaatcgcaatcgcatacgaaaaatcacctatcgcaattgcagAAACGTGCGTTCCAATGTCTGATCCTGCCGAAGAGGCTGCTTTCATCGAGAAGCTCTACGAATACGGCGAGCAACTCAACAATGCCAAGGACAAGTCGCA
                               aaaaatca  TA-rich tract