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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaggtccgtttcatccgttctgactcagcgaactcggccacgtcactctcctaactaatgccattcattttttttcttaaattatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTCTTTGACAAGTACCCGGCTCTGGTCACCGGATTTTTCTTCTTCACGTG

Basic information

species Glycine max
transcript GLYMA07G32190.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G32190.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv10s0003g00300.t01 (Vitis vinifera), 3'ss of exon 1
gtgaggtccgtttcatccgttctgactcagcgaactcggccacgtcactctcctaactaatgccattcattttttttcttaa-attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTCTTTGACAAGTACCCGGCTCTGGTCACCGGATTTTTCTTCTTCACGTG
|||||||||||||| | ||||||||| | |   ||    |    | | || ||  ||||||    || ||||| |  |      || || ||| || || ||| ||         |||||||| ||||||||||||||||| || || || ||||||||||||| |||
gtgaggtccgtttccttcgttctgacccggtcgacgacccgttttgagtcacccgactaatt---tttattttctgacccgttgttttctcagGGACGCTAAGATT---------GGGTTCTTGGACAAGTACCCGGCTCTAGTTACGGGGTTTTTCTTCTTCATGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209720817|gb|BW677391.1|BW677391
EST:     CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTCTTCGACAAGTACCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTCTTTGACAAGTACCCGGCTCTGGT
EST: gi|120534376|gb|EH262509.1|EH262509
EST:     CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTCTTTGACAAGTACCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTCTTTGACAAGTACCCGGCTCTGGT
EST: gi|213600485|gb|DB966194.1|DB966194
EST:     CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTCTTCGACAAGTACCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTCTTTGACAAGTACCCGGCTCTGGT
EST: gi|7041761|gb|AW471655.1|AW471655
EST:     CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTCTTCGACAAGTACCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTCTTTGACAAGTACCCGGCTCTGGT
EST: gi|213615350|gb|DB963544.1|DB963544
EST:     CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTCTTCGACAAGTACCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTCTTTGACAAGTACCCGGCTCTGGT
EST: gi|20449842|gb|BQ253966.1|BQ253966
EST:     CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTCTTCGACAAGTACCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTCTTTGACAAGTACCCGGCTCTGGT
EST: gi|20448694|gb|BQ252818.1|BQ252818
EST:     CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGGGTGAG                     
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCC----G-Ggtgaggtccg ... attatc
EST: gi|120534368|gb|EH262501.1|EH262501
EST:     CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTCTTTGACAAGTACCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTCTTTGACAAGTACCCGGCTCTGGT
EST: gi|213589339|gb|DB961672.1|DB961672
EST:     CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTCTTCGACAAGTACCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTCTTTGACAAGTACCCGGCTCTGGT
EST: gi|20448800|gb|BQ252924.1|BQ252924
EST:     CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTCTTCGACAAGTACCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTCTTTGACAAGTACCCGGCTCTGGT
EST: gi|213587747|gb|DB955609.1|DB955609
EST:     CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTCTTCGACAAGTACCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTCTTTGACAAGTACCCGGCTCTGGT
EST: gi|209721814|gb|BW680013.1|BW680013
EST:     CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTCTTCGACAAGTACCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTCTTTGACAAGTACCCGGCTCTGGT
EST: gi|120531507|gb|EH259640.1|EH259640
EST:     CCATGCCTCGCCGCCGCCTCCTAGCCGGCCGAGGGTAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTCTTTGACAAGTACCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTCTTTGACAAGTACCCGGCTCTGGT
EST: gi|20812093|gb|BQ296571.1|BQ296571
EST:     CCATGCCTCGCCGCCGCCTCCTCTCCGGCCGAGGGTAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTCTTCGACAAGTACCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTCTTTGACAAGTACCCGGCTCTGGT
EST: gi|15285164|gb|BI469055.1|BI469055
EST:     CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTCTTCGACAAGTACCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTCTTTGACAAGTACCCGGCTCTGGT
EST: gi|11412623|gb|BF424634.1|BF424634
EST:     CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTCTTCGACAAGTACCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTCTTTGACAAGTACCCGGCTCTGGT
EST: gi|213587892|gb|DB959716.1|DB959716
EST:     CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTCTTCGACAAGTACCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTCTTTGACAAGTACCCGGCTCTGGT
EST: gi|15337762|gb|BI498418.1|BI498418
EST:     CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTCTTCGACAAGTACCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTCTTTGACAAGTACCCGGCTCTGGT
EST: gi|26058933|gb|CA801847.1|CA801847
EST:     CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTCTTTGACAAGTACCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTCTTTGACAAGTACCCGGCTCTGGT
EST: gi|16104872|gb|BI892612.1|BI892612
EST:     CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTCTTCGACAAGTACCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTCTTTGACAAGTACCCGGCTCTGGT
EST: gi|213593376|gb|DB973569.1|DB973569
EST:     CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTCTTCGACAAGTACCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTCTTTGACAAGTACCCGGCTCTGGT
EST: gi|23059611|gb|BU578385.1|BU578385
EST:     CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTCTTCGACAAGTACCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTCTTTGACAAGTACCCGGCTCTGGT
EST: gi|213602207|gb|DB958467.1|DB958467
EST:     CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTCTTCGACAAGTACCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTCTTTGACAAGTACCCGGCTCTGGT
EST: gi|24137046|gb|BU927556.1|BU927556
EST:     CCATGCCTCGCCGTCTCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTCTTTGACAAGTACCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTCTTTGACAAGTACCCGGCTCTGGT
EST: gi|213590584|gb|DB973329.1|DB973329
EST:     CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTCTTCGACAAGTACCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTCTTTGACAAGTACCCGGCTCTGGT
EST: gi|15287351|gb|BI471242.1|BI471242
EST:     CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTCTTCGACAAGTACCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTCTTTGACAAGTACCCGGCTCTGGT
EST: gi|208041294|gb|GD838579.1|GD838579
EST:     CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTCTTCGACAAGTACCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTCTTTGACAAGTACCCGGCTCTGGT
EST: gi|10847076|gb|BF069843.1|BF069843
EST:     CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTCTTCGACAAGTACCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTCTTTGACAAGTACCCGGCTCTGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggccacgtcactctcctaactaatgccattcattttttttcttaaattatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTCTTTGACAAGTACCCGGCTCTGGTCACCGGATTTTTCTTCTTCACGTG
                           attcattttttttctt  TA-rich tract