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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactctcactcttcttctatatcttccactacctttttctcgattccaaattcaacttctgcttctctctcatcttagGTCACCCGATGGTTCCTGTTTCCTCACCTCTTCCGACGACAACACTCTCCGCCTCTTCGCGCC

Basic information

species Glycine max
transcript GLYMA07G30960.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209724271|gb|BW666613.1|BW666613
EST:     CAGTTCATCACTCCTTCCAACCCTAACAATTTCTTCAAGGCCGTTAAATG                         GTCACCCGATGGTTCCTGTTTCCTCACCTCTTGCGGACGACAACACTCTCC
genomic: CAGTTCATCACTCCTTCCAACCCTAACAATTTCTTCAAGGCCGTTAAATGgtactctcac ... ctcatcttagGTCACCCGATGGTTCCTGTTTCCTCACCTCTTCCG-ACGACAACACTCTCC
EST: gi|16996753|gb|BM086125.1|BM086125
EST:     CAGTTCATCACTCCTTCCAACCCTAACAATTTCTTCAAGGCCGTTAAATG                         GTCACCCGATGGTTCCTGTTTCCTCACCTCTTCCGACGACAACACTCTCCG
genomic: CAGTTCATCACTCCTTCCAACCCTAACAATTTCTTCAAGGCCGTTAAATGgtactctcac ... ctcatcttagGTCACCCGATGGTTCCTGTTTCCTCACCTCTTCCGACGACAACACTCTCCG
EST: gi|208183319|gb|GD981485.1|GD981485
EST:     CAGTTCATCACTCCTTCCAACCCTAACAATTTCTTCAAGGCCGTTAAATG                         GTCACCCGATGGTTCCTGTTTCCTCACCTCTTCCGACGACAACACTCTCCG
genomic: CAGTTCATCACTCCTTCCAACCCTAACAATTTCTTCAAGGCCGTTAAATGgtactctcac ... ctcatcttagGTCACCCGATGGTTCCTGTTTCCTCACCTCTTCCGACGACAACACTCTCCG
EST: gi|298169078|gb|HO020438.1|HO020438
EST:     CAGTTCATCACTCCTTCCAACCCTAACAATTTCTTCAAGGCCGTTAAATG                         GTCACCCGATGGTTCCTGTTTCCTCACCTCTTCCGACGACAACACTCTCCG
genomic: CAGTTCATCACTCCTTCCAACCCTAACAATTTCTTCAAGGCCGTTAAATGgtactctcac ... ctcatcttagGTCACCCGATGGTTCCTGTTTCCTCACCTCTTCCGACGACAACACTCTCCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttccactacctttttctcgattccaaattcaacttctgcttctctctcatcttagGTCACCCGATGGTTCCTGTTTCCTCACCTCTTCCGACGACAACACTCTCCGCCTCTTCGCGCC
                                cttctgcttctctctc  CT-rich tract
                        aaattcaa  TA-rich tract