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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtgtgcttttatccacctctattttctgaggcagcgaagtacagaacactctaaagatcaattattttcttttgttttctttcagCATTATTCAAATTCCATCTGGGTGTCTATAACCGGCACAAACAAACGCAAATGAGATTTCCCAAGTTGGGTTTCATTGCTTCATGAGCACTACCACTATG

Basic information

species Glycine max
transcript GLYMA07G30360.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192295068|gb|FG986787.1|FG986787
EST:     CTAAGCTTTCATTTTCTGCAGAGTTTTCTACCTTTCACAGCTTCCTACGT                         CATTATTCAAATTCCATCTGGGTGTCTATAACCGGCACAAACAAACGCAAA
genomic: CTAAGCTTTCATTTTCTGCAGAGTTTTCTACCTTTCACAGCTTCCTACGTgtacgtgtgc ... tttctttcagCATTATTCAAATTCCATCTGGGTGTCTATAACCGGCACAAACAAACGCAAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcagcgaagtacagaacactctaaagatcaattattttcttttgttttctttcagCATTATTCAAATTCCATCTGGGTGTCTATAACCGGCACAAACAAACGCAAATGAGATTTCCCAAGTTGGGTTTCATTGCTTCATGAGCACTACCACTATG
                  ctctaaa  putative branch site (score: 3)
                               ttattttcttttgttt  putative PPT
                     taaagatcaattattt  TA-rich tract